Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f33-build-230557-49955/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1585699200 Wrote: /builddir/build/SRPMS/gromacs-2019.6-2.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'], chrootPath='/var/lib/mock/f33-build-230557-49955/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1585699200 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.T3XkmZ + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf gromacs-2019.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/gromacs-2019.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd gromacs-2019.6 + /usr/bin/gzip -dc /builddir/build/SOURCES/regressiontests-2019.6.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #0 (gromacs-dssp-path.patch):' Patch #0 (gromacs-dssp-path.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/gmxana/gmx_do_dssp.cpp Hunk #1 succeeded at 501 (offset 56 lines). Hunk #2 succeeded at 640 (offset 50 lines). Patch #1 (gromacs-issue-2366.patch): + echo 'Patch #1 (gromacs-issue-2366.patch):' + /usr/bin/patch --no-backup-if-mismatch -p1 --fuzz=0 patching file src/gromacs/hardware/tests/hardwaretopology.cpp Hunk #1 succeeded at 195 (offset 10 lines). + install -Dpm644 /builddir/build/SOURCES/manual-2019.6.pdf ./serial/docs/manual/gromacs.pdf + rm -r src/external/fftpack src/external/tng_io src/external/lmfit + sed -i 's/set(_timeout [0-9]*)/set(_timeout 900)/' src/testutils/TestMacros.cmake + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.YMSvjZ + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 101054 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial + pushd serial ~/build/BUILD/gromacs-2019.6/serial ~/build/BUILD/gromacs-2019.6 + test -z '' + cp -al ../regressiontests-2019.6 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2019.6/serial/tests ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2019.6/serial/tests -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/serial + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/depend.internal". 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-Wno-comment -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energyreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 0%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 2%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building C object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/md5sum.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/md5sum.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 10%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 11%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/serial/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 49%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, t_vsiteconf**, int*, t_vsitetop**, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp:196:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/gmx_lmcurve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/expfit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysissettings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/selection/symrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/symrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src 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src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp:74: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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[ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX shared library ../../lib/libgromacs.so cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgromacs.so.4 -o ../../lib/libgromacs.so.4.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp -ldl /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -ldl -lrt /usr/lib64/libfftw3f.so -lopenblas -lopenblas -lpthread -fopenmp /usr/lib64/libOpenCL.so -lm /usr/lib64/libhwloc.so -lrt /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib64/liblmfit.so cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.4.0.0 ../../lib/libgromacs.so.4 ../../lib/libgromacs.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/ld: CMakeFiles/libgromacs.dir/math/utilities.cpp.o: in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: CMakeFiles/libgromacs.dir/math/utilities.cpp.o: in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/share/template /builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/depend.internal". 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Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/depend.internal". Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX executable ../../bin/gmx cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.4.0.0 -fopenmp /usr/lib64/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019.6/serial/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-riscv64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p mpich + pushd mpich ~/build/BUILD/gromacs-2019.6/mpich ~/build/BUILD/gromacs-2019.6 + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test -z mpich ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich -DGMX_LIBS_SUFFIX=_mpich -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich" -- Using manually set library suffix: "_mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/mpich + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". 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Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". 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Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Scanning dependencies of target clFFT make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building C object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/md5sum.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/md5sum.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 27%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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'/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp:74: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -isystem 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clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Linking CXX executable ../../bin/mdrun_mpich cd /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich ../../lib/libgromacs_mdrun_mpich.a /usr/lib64/mpich/lib/libmpi.so -fopenmp -ldl /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/ld: ../../lib/libgromacs_mdrun_mpich.a(utilities.cpp.o): in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ../../lib/libgromacs_mdrun_mpich.a(utilities.cpp.o): in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n mpich + module unload mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-riscv64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi + pushd openmpi ~/build/BUILD/gromacs-2019.6/openmpi ~/build/BUILD/gromacs-2019.6 + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test -z openmpi ++ test -n '' ++ echo -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi -DGMX_LIBS_SUFFIX=_openmpi -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DGMX_GPU:BOOL=ON -DGMX_USE_OPENCL:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for CL_VERSION_2_2 -- Looking for CL_VERSION_2_2 - found -- Found OpenCL: /usr/lib64/libOpenCL.so (found version "2.2") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.8 -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_r2c in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so -- Looking for fftwf_plan_many_dft_c2r in /usr/lib64/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_vsx in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib64/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/lib64/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi" -- Using manually set library suffix: "_openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Could NOT find clFFT (missing: clFFT_INCLUDE_DIR clFFT_LIBRARY) -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/openmpi + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend.internal". Scanning dependencies of target clFFT make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". 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Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 1%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/accessors.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/accessors.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/action.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/action.transpose.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 2%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/enqueue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/enqueue.cpp:19: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.h:23, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/fft_binary_lookup.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building C object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/md5sum.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/md5sum.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/lifetime.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/lifetime.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.copy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.copy.cpp:21: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.h:20, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.gcn.cpp:28: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 7%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/repo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.h:22, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/repo.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/transform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/transform.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/stdafx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.extern.cpp:22: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.h:27, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.CPU.cpp:30: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/plan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/plan.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 8%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer/statisticalTimer.GPU.cpp:26: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 5%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.h:21, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.transpose.cpp:24: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 4%] Building CXX object src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library -I/builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/statTimer -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -w -o CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/../include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/private.h:29, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.h:25, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/library/generator.stockham.cpp:20: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Built target clFFT make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 27%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/int64_to_int.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/conformation-utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_jit_support.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl.cpp:72: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_data_mgmt.cpp:54: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.h:52, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp:52: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-3dfft-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft.h:55, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-3dfft-ocl.cpp:51: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl-ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl-ocl.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-timings.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gputraits_ocl.h:45, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-timings.cpp:45: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp In file included from /usr/include/CL/cl.h:32, from /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src/include/clFFT.h:33, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp:53: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils_ocl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils_ocl.cpp:62: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/oclutils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.cpp:42: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_caching.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_caching.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-internal.cpp:74: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/ocl_compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gmxopencl.h:62, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/oclutils.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.h:49, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/ocl_compiler.cpp:46: /usr/include/CL/cl_version.h:34:104: note: '#pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)' 34 | #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") | ^ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -isystem /builddir/build/BUILD/gromacs-2019.6/src/gromacs/../external/clFFT/src/include -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/accessors.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/action.transpose.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/enqueue.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/fft_binary_lookup.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.copy.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.stockham.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/generator.transpose.gcn.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/lifetime.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/md5sum.c.o clFFT-build/CMakeFiles/clFFT.dir/library/plan.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/repo.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/stdafx.cpp.o clFFT-build/CMakeFiles/clFFT.dir/library/transform.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.CPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.GPU.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/statisticalTimer.extern.cpp.o clFFT-build/CMakeFiles/clFFT.dir/statTimer/stdafx.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_openmpi.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Linking CXX executable ../../bin/mdrun_openmpi cd /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi ../../lib/libgromacs_mdrun_openmpi.a /usr/lib64/openmpi/lib/libmpi.so -fopenmp -ldl /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3f.so -lopenblas -lpthread /usr/lib64/libOpenCL.so -lm /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/ld: ../../lib/libgromacs_mdrun_openmpi.a(utilities.cpp.o): in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ../../lib/libgromacs_mdrun_openmpi.a(utilities.cpp.o): in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n openmpi + module unload mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + mkdir -p serial_d + pushd serial_d ~/build/BUILD/gromacs-2019.6/serial_d ~/build/BUILD/gromacs-2019.6 + test -z '' + cp -al ../regressiontests-2019.6 tests/ + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n '' ++ echo -DGMX_X11=ON ++ test -z '' ++ echo -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2019.6/serial_d/tests ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_X11=ON -DREGRESSIONTEST_PATH=/builddir/build/BUILD/gromacs-2019.6/serial_d/tests -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Found X11: /usr/include -- Looking for XOpenDisplay in /usr/lib64/libX11.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could not convert sample image, ImageMagick convert can not be used -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Can not build documentation with Python 3 -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/serial_d + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/depend.internal". Scanning dependencies of target view_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend.internal". Scanning dependencies of target mdrun_test_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/buttons.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/buttons.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/3dview.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/3dview.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/dialogs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/dialogs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/fgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/fgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energyreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/logo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/logo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/moduletest.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 0%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/energycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/molps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/molps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 2%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nleg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nleg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/popup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/popup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/alltoall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/alltoall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/pulldown.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/pulldown.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/barrier.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/barrier.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/nmol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/nmol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_send_recv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_send_recv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_protocol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_protocol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/bcast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/bcast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/p2p_wait.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/p2p_wait.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/collective.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/collective.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/simulationdatabase.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/profile.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/profile.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/view.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/view.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/terminationhelper.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/event.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/event.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/comm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/comm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/x11.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/x11.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/reduce_fast.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/reduce_fast.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scatter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scatter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlghi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlgitem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/group.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/group.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xdlg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xdlg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/list.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/list.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectoryreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/scan.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/scan.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/programs/CMakeFiles/view_objlib.dir/view/xmb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/view/xmb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Built target view_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/numa_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/numa_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/once.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/once.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 5%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/trajectorycomparison.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 9%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 13%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 18%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/scanner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/selection/parser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/serial_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 22%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 27%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 31%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxomp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/futil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/vmdio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 36%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building C object src/gromacs/CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/vmd_molfile/vmddlopen.c make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/angle_correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/angle_correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dens_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/binsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/simd/support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/cmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 40%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/anadih.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/eigio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd 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src/gromacs/CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/fitahx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/dlist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anadock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bundle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_analyze.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_anaeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_clustsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_chi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_confrms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_covar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_density.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_current.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densmap.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dielectric.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_densorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyndom.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_cluster.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dyecoupl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dos.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_do_dssp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_dipoles.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_editconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_filter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_eneconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_enemat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_gyrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_genion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_h2order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o cd 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object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_lie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_helixorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_edi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hydorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mk_angndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_morph.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mdmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_mindist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_make_ndx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmeig.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmtraj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_msd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 45%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_hbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmens.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_nmr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_principal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_order.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_pme_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_polystat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_potential.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saxs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotacf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_saltbr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rotmat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sans.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sigeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rmsdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_rms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spatial.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sorient.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_spol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tcaf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_sham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjcat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjorder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_traj.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_vanhove.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_velacc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wheel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_trjconv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nrama.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/powerspect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/hxprops.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_tune_pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/princ.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/thermochemistry.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/thermochemistry.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/pp2shift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/nsfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_xpm2ps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/add_par.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/sfactor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/calch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/fflibutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/convparm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_ad.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genhydro.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/genconf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_atomtype.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxana/gmx_wham.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gpp_nextnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/h_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp:44: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void read_vsite_database(const char*, t_vsiteconf**, int*, t_vsitetop**, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gen_vsite.cpp:196:24: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output may be truncated copying 4094 bytes from a string of length 4094 [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/makeexclusiondistances.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/makeexclusiondistances.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hackblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/gmxcpp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/hizzie.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/nm2type.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pgutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readrot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readpull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/resall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/insert-molecules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/grompp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/specbond.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/ter_db.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/tomorse.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topdirs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topshake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toputil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/solvate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 54%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/pdb2gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/toppush.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/xlate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/topio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/crosscorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/x2top.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/polynomials.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/integrate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/autocorr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/vsite_parm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o cd 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58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datamodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/correlationfunctions/manyautocorrelation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/abstractdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/analysisdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/arraydata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxpreprocess/readir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/dataproxy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/frameaverager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/average.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/displacement.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/centerofmass.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/datastorage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o cd 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[ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/plot.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/mempool.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/mempool.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/modules/histogram.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/evaluate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/indexutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/nbsearch.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/poscalc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/scanner_internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/scanner_internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/compiler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/compiler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/compiler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/parsetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 59%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionbehavior.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selvalue.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selvalue.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selmethod.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selmethod.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selelem.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selelem.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selelem.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectionoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selhelp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selhelp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectioncollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/selectioncollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_merge.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_merge.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_position.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_insolidangle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_insolidangle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_permute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_keywords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_keywords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysissettings.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_same.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_simple.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/selection/sm_simple.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/selection/symrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/cmdlinerunner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/cmdlinerunner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/analysismodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/analysismodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/freevolume.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/freevolume.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/distance.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/pairdist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/angle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/rdf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/sasa.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/trajectory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/trajectory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/surfacearea.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/surfacearea.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/topologyinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/topologyinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/runnercommon.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/runnercommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/select.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectoryanalysis/modules/select.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/report-methods.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/report-methods.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/convert_tpr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/convert_tpr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 63%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tools/check.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/check.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tools/check.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcmu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 72%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 77%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 81%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 86%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 68%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 90%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 95%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/energyframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/basicoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX shared library ../../lib/libgromacs_d.so cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -shared -Wl,-soname,libgromacs_d.so.4 -o ../../lib/libgromacs_d.so.4.0.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -ldl -lrt /usr/lib64/libfftw3.so -lopenblas -lopenblas -lpthread -fopenmp -lm /usr/lib64/liblmfit.so cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.4.0.0 ../../lib/libgromacs_d.so.4 ../../lib/libgromacs_d.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/ld: CMakeFiles/libgromacs.dir/math/utilities.cpp.o: in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: CMakeFiles/libgromacs.dir/math/utilities.cpp.o: in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/depend.internal". Scanning dependencies of target gmx make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/depend.internal". Scanning dependencies of target template make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/gmx.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/gmx.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object src/programs/CMakeFiles/gmx.dir/legacymodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/legacymodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX executable ../../bin/gmx_d cd /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.4.0.0 -fopenmp /usr/lib64/libX11.so -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target gmx make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Building CXX object share/template/CMakeFiles/template.dir/template.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/share/template/template.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Linking CXX executable ../../bin/template cd /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs_d.so.4.0.0 -fopenmp -lm make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target template make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-riscv64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvbXBpY2gtcmlzY3Y2NCIsWyJmdWxsTmFtZSJdPSJtcGkvbXBpY2gtcmlzY3Y2NCIsWyJsb2FkT3JkZXIiXT0xLHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Im1waS9tcGljaC1yaXNjdjY0Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9t ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ ~/build/BUILD/gromacs-2019.6/mpich_d ~/build/BUILD/gromacs-2019.6 + mkdir -p mpich_d + pushd mpich_d + test -z mpich + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n mpich ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin ++ test -z mpich ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_mpich_d -DGMX_LIBS_SUFFIX=_mpich_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/mpich/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/mpich/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/mpich/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpich_d" -- Using manually set library suffix: "_mpich_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/mpich_d + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/depend.internal". Scanning dependencies of target mdrun_objlib make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". Scanning dependencies of target libgromacs_external make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/depend.internal". Scanning dependencies of target libgromacs_generated make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/errhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/errhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/matrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/mpich_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/invblock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/symtab.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && 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'/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/binaryinformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/coolstuff.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fileredirector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/fatalerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxassert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && 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/usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/logger.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/inmemoryserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/programcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/physicalnodecommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/pleasecite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/loggerbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetree.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/smalloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strdb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strconvert.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/sysinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreeserializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/txtdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textreader.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/libxdrf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biassharing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/awh.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationhistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/read-params.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && 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[ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd 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make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd 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Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/integrator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/mdmodules.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/runner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions 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CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpich_d.a make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target libgromacs make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/depend.internal". Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/mpich_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/mpich-riscv64 -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Linking CXX executable ../../bin/mdrun_mpich_d cd /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -fexceptions -fasynchronous-unwind-tables -fstack-clash-protection -D_GLIBCXX_ASSERTIONS -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,--as-needed -Wl,-rpath -Wl,/usr/lib64/mpich/lib -Wl,--enable-new-dtags -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_mpich_d ../../lib/libgromacs_mdrun_mpich_d.a /usr/lib64/mpich/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/mpich/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/ld: ../../lib/libgromacs_mdrun_mpich_d.a(utilities.cpp.o): in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ../../lib/libgromacs_mdrun_mpich_d.a(utilities.cpp.o): in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n mpich + module unload mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-riscv64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p openmpi_d ~/build/BUILD/gromacs-2019.6/openmpi_d ~/build/BUILD/gromacs-2019.6 + pushd openmpi_d + test -z openmpi + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH ++ test -n openmpi ++ echo -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin ++ test -z openmpi ++ test -n _d ++ echo -DGMX_DOUBLE:BOOL=ON + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=ON -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_SKIP_BUILD_RPATH:BOOL=ON -DGMX_BLAS_USER=openblas -DGMX_BUILD_UNITTESTS:BOOL=ON -DGMX_EXTERNAL_LMFIT:BOOL=ON -DGMX_USE_LMFIT=external -DGMX_EXTERNAL_TNG:BOOL=ON -DGMX_EXTERNAL_TINYXML2:BOOL=OFF -DGMX_LAPACK_USER=openblas -DGMX_USE_RDTSCP=OFF -DGMX_SIMD=None ' ' -DGMX_BUILD_MDRUN_ONLY:BOOL=ON -DGMX_MPI:BOOL=ON -DGMX_THREAD_MPI:BOOL=OFF -DGMX_DEFAULT_SUFFIX:BOOL=OFF -DBUILD_SHARED_LIBS:BOOL=OFF -DGMX_BINARY_SUFFIX=_openmpi_d -DGMX_LIBS_SUFFIX=_openmpi_d -DCMAKE_INSTALL_BINDIR=/usr/lib64/openmpi/bin -DGMX_DOUBLE:BOOL=ON .. -- The C compiler identification is GNU 10.1.1 -- The CXX compiler identification is GNU 10.1.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:53 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:226 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Looking for fedisableexcept in m -- Looking for fedisableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Searching 16 bit integer - Using unsigned short -- Check if the system is big endian - little endian -- Found MPI_C: /usr/lib64/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib64/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- hwloc version: -- Found Hwloc: /usr/lib64/libhwloc.so (found suitable version "2.0.4", minimum required is "1.5") -- Looking for C++ include pthread.h -- Looking for C++ include pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Detected build CPU vendor - Unknown vendor -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 0 -- Detected build CPU model - 0 -- Detected build CPU stepping - 0 -- Detected build CPU features - -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - not present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_r2c in /usr/lib64/libfftw3.so - found -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so -- Looking for fftw_plan_many_dft_c2r in /usr/lib64/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib64/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib64/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Checking that user BLAS library openblas works -- Looking for dgemm_ -- Looking for dgemm_ - found -- Checking that user LAPACK library openblas works -- Looking for cheev_ -- Looking for cheev_ - found -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_openmpi_d" -- Using manually set library suffix: "_openmpi_d" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Performing Test HAS_NO_MISSING_DECL -- Performing Test HAS_NO_MISSING_DECL - Success -- Performing Test HAS_NO_MISSING_PROTO -- Performing Test HAS_NO_MISSING_PROTO - Success -- Performing Test HAS_NO_MSVC_UNUSED -- Performing Test HAS_NO_MSVC_UNUSED - Failed -- Performing Test HAS_DECL_IN_SOURCE -- Performing Test HAS_DECL_IN_SOURCE - Failed -- Performing Test LMFIT_LINKS_OK -- Performing Test LMFIT_LINKS_OK - Success CMake Warning (dev) at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:272 (message): The package name passed to `find_package_handle_standard_args` (lmfit) does not match the name of the calling package (Lmfit). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/FindLmfit.cmake:84 (find_package_handle_standard_args) cmake/gmxManageLmfit.cmake:77 (find_package) src/gromacs/CMakeLists.txt:320 (gmx_manage_lmfit) This warning is for project developers. Use -Wno-dev to suppress it. -- Found lmfit: /usr/include (found version "8.2.2") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS_RELEASE GMX_EXTERNAL_LMFIT INCLUDE_INSTALL_DIR LIB_INSTALL_DIR LIB_SUFFIX SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/gromacs-2019.6/openmpi_d + /usr/bin/make -O -j8 V=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/depend.internal". 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-Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/sparsematrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/sparsematrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/eigensolver.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/eigensolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/matrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src 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Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/nrjac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/nrjac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/tmpi_malloc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/tmpi_malloc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/atomic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/atomic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 2%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/lock.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/lock.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/pthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/pthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/__/external/thread_mpi/src/system_error.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/src/system_error.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Building CXX object src/programs/CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/mdrun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Built target mdrun_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 3%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 0%] Building CXX object src/gromacs/CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/libgromacs_external.dir/linearalgebra/gmx_arpack.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /usr/include/string.h:504, from /usr/include/c++/10/cstring:42, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:41: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2046:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2050:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2054:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2058:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2022:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2074:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dsaup2_(int*, const char*, int*, const char*, int*, int*, double*, double*, int*, int*, int*, int*, double*, int*, double*, int*, double*, double*, double*, int*, double*, int*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2089:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4910:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4914:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4918:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4922:29: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4886:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4938:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void ssaup2_(int*, const char*, int*, const char*, int*, int*, float*, float*, int*, int*, int*, int*, float*, int*, float*, int*, float*, float*, float*, int*, float*, int*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:4953:25: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 2 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2507:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2503:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2499:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void dseupd_(int*, const char*, int*, double*, double*, int*, double*, const char*, int*, const char*, int*, double*, double*, int*, double*, int*, int*, int*, double*, double*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:2495:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5371:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5367:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5363:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'char* strncpy(char*, const char*, size_t)', inlined from 'void sseupd_(int*, const char*, int*, float*, float*, int*, float*, const char*, int*, const char*, int*, float*, float*, int*, float*, int*, int*, int*, float*, float*, int*, int*)' at /builddir/build/BUILD/gromacs-2019.6/src/gromacs/linearalgebra/gmx_arpack.cpp:5359:21: /usr/include/bits/string_fortified.h:106:34: warning: 'char* __builtin_strncpy(char*, const char*, long unsigned int)' output truncated before terminating nul copying 6 bytes from a string of the same length [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Built target libgromacs_external make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 5%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 6%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 7%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 8%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 10%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 11%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 12%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 14%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 15%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 16%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 17%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 19%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 20%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 21%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 23%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused -Wno-unused-parameter -Wno-missing-declarations -o CMakeFiles/libgromacs_generated.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Built target libgromacs_generated make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Generating baseversion-gen.cpp cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/builddir/build/BUILD/gromacs-2019.6/openmpi_d/VersionInfo.cmake -D VERSION_CMAKEIN=/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/baseversion-gen.cpp.cmakein -D VERSION_OUT=utility/baseversion-gen.cpp -D GMX_SOURCE_DOI=10.5281/zenodo.3685922 -P /builddir/build/BUILD/gromacs-2019.6/cmake/gmxConfigureVersionInfo.cmake cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 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Dependee "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/depend.internal". Scanning dependencies of target libgromacs make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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/usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineinit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineoptionsmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/filenm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/viewit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlineprogramcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinemodulemanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/shellcompletions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 25%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/cmdlinehelpmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/box.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/box.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/box.cpp:65: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/atomdistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/atomdistribution.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 26%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/pargs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/collect.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/collect.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/collect.cpp:56: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlbtiming.cpp:46: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/cellsizes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/cellsizes.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dlb.cpp:52: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/distribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/distribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_setup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_constraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/ga2la.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/ga2la.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/dump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/dump.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomset.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomset.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_specatomcomm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/localatomsetmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/3dtransforms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/functions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/functions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/units.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/units.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/do_fit.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/do_fit.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/invertmatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/utility.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/utility.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.h:48, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/utility.cpp:45: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/veccompare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/veccompare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 28%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec.cpp:104: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/md_enums.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/math/vecdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/vecdump.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/iforceprovider.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/df_history.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/redistribute.cpp:62: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 29%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_internal.h:51, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/domdec_topology.cpp:87: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/observableshistory.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/inputrec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helptopic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/rstparser.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/boxutilities.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdtypes/state.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 32%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc-simd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/seed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/seed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/rmpbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/random/tabulatednormaldistribution.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/helpwritercontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/pbc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 33%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pbcutil/mshift.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/walltime_accounting.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 30%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/domdec/partition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/partition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/partition.cpp:74: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/forcetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/splineutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/cubicsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/tables/quadraticsplinetable.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomprop.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 34%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/wallcycle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/block.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/block.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/ifunc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/exclusionblocks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/exclusionblocks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/forcefieldparameters.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/forcefieldparameters.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/atomsbuilder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/invblock.cpp.o cd 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[ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/idef.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/idef.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/residuetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/symtab.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/alignedallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/basenetwork.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 35%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/index.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/index.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/topsort.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topsort.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/compare.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/compare.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorcodes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/topology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/errorformat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/cstringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 37%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/topology/mtop_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/directoryenumerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/futil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/filestream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/filestream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/gmxregex.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/exceptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 38%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/datafilefinder.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/init.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/init.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory 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make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 39%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/ikeyvaluetreeerror.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/logger.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/niceheader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/physicalnodecommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/messagestringcollector.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/strdb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/path.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/path.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringstream.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 42%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o cd 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directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textreader.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/variant.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/variant.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/stringutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/filetypes.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/textwriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmx_internal_xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/confio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/confio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/espio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/espio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/g96io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/gmxfio-xdr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/enxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 41%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/utility/keyvaluetreetransform.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/md5.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/md5.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/groio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/groio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/mtxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/oenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 44%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/matio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/matio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/timecontrol.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/warninp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trrio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/pdbio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 43%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/checkpoint.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/trxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xdrd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/writeps.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tngio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xtcio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/xvgr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/readinp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/output.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/output.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/output.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 47%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/swap/swapcoords.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 46%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fileio/tpxio.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pullutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/essentialdynamics/edsam.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasparams.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/bias.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/bias.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/awh.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/pulling/pull_rotation.cpp:71: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/coordstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biaswriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/correlationtensor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/histogramsize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/pointstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o cd 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'/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imdsocket.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/simd/support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/read-params.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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-Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/chargegroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nrnb.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 48%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/awh/biasstate.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/network.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 50%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/imd/imd.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/imd/imd.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 51%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gmxlib/nonbonded/nonbonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/checkpointhandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/checkpointhandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o cd 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Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/boxdeformation.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/boxdeformation.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calcvir.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/compute_io.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constraintrange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constraintrange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/calc_verletbuf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/gmx_omp_nthreads.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/force.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/force.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/constr.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 52%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/broadcaststructs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/coupling.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/expanded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/groupcoord.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/md_support.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdatoms.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdsetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin_bar.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdoutf.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 53%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/forcerec.cpp:75: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/lincs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/lincs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/mdebin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_atomdata.cpp:55: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 55%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/membed.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/membed.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.cpp:38: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 57%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 58%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 60%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 61%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 62%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 64%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 65%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 66%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 67%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 69%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 70%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 71%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 73%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 74%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 75%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 76%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 78%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 79%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 80%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 82%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gamess.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/perf_est.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nsgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 56%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_tuning.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_gaussian.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_mopac.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rbin.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qm_orca.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/resethandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/resethandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/qmmm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/rf_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sighandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/ns.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/simulationsignal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shake.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 84%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/settle.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/splitter.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 83%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_search.cpp:57: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stophandler.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stophandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/stat.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/shellfc.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tgroup.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/trajectory_writing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 85%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_internal.h:46, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/nbnxn_grid.h:41, from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/sim_util.cpp:84: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vcm.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroupscog.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/wnblist.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/updategroups.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/update.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/update.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/disre.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-internal.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/listed-forces.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/gpubonded-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/gpubonded-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/restcbt.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/electricfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/manage-threading.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/pairs.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/position-restraints.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/bonded.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 88%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/orires.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 87%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/vsite.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald-utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/calculate-spline-moduli.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/ewald.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gather.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/long-range-correction.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-grid.cpp:49: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-pp.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spline-work.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-load-balancing.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-redistribute.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program-impl.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program-impl.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-program.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-gpu-program.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/calcgrid.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 89%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme.cpp:103: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-solve.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/parallel_3dfft.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' In file included from /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-only.cpp:88: /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:562:13: warning: 'bool gmx_cycles_have_counter()' defined but not used [-Wunused-function] 562 | static bool gmx_cycles_have_counter(void) | ^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/gromacs-2019.6/src/gromacs/timing/cyclecounter.h:404:21: warning: 'gmx_cycles_t gmx_cycles_read()' defined but not used [-Wunused-function] 404 | static gmx_cycles_t gmx_cycles_read(void) | ^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/clfftinitializer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/clfftinitializer.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/gpu_hw_info.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 91%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/ewald/pme-spread.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft_fftw3.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/hostallocator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/gpu_utils/gpu_utils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/fft/fft5d.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/identifyavx512fmaunits.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/identifyavx512fmaunits.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/integrator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/detecthardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/detecthardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/printhardware.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/legacymdrunoptions.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/legacymdrunoptions.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/logging.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/logging.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/multisim.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/hardwaretopology.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 92%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/hardware/cpuinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/replicaexchange.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/simulationcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/simulationcontext.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/rerun.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/rerun.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/handlerestart.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/handlerestart.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/mimic.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 93%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/md.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/md.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/md.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/threadaffinity.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/minimize.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/behaviorcollection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 94%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrun/tpi.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/tpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsection.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsection.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoptionmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/abstractoption.cpp make[2]: Leaving directory 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrun/runner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsassigner.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/optionsvisitor.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/options.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/options.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/timeunitmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/timeunitmanager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoption.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/filenameoption.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/manager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/manager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/manager.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/findallgputasks.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/findallgputasks.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/restraint/restraintmdmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/restraint/restraintmdmodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/decidegpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/reportgpuusage.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 97%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/treesupport.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/options/treesupport.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/resourcedivision.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/utility/baseversion-gen.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/trajectory/trajectoryframe.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/trajectory/trajectoryframe.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/taskassignment.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/trajectory/energyframe.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/usergpuids.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/taskassignment/usergpuids.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicCommunicator.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicCommunicator.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mimic/MimicUtils.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mimic/MimicUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 96%] Building CXX object src/gromacs/CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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Scanning dependencies of target mdrun make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Building CXX object src/programs/CMakeFiles/mdrun.dir/mdrun_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/openmpi_d/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -isystem /usr/include/openmpi-riscv64 -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun_main.cpp make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Linking CXX executable ../../bin/mdrun_openmpi_d cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/c++ -pthread -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-rpath -Wl,/usr/lib64/openmpi/lib -Wl,--enable-new-dtags -pthread -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../bin/mdrun_openmpi_d ../../lib/libgromacs_mdrun_openmpi_d.a /usr/lib64/openmpi/lib/libmpi.so -fopenmp /usr/lib64/libtng_io.so.1.8.2 /usr/lib64/libhwloc.so -lrt /usr/lib64/openmpi/lib/libmpi.so /usr/lib64/libfftw3.so -lopenblas -lpthread -lm /usr/lib64/liblmfit.so make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/ld: ../../lib/libgromacs_mdrun_openmpi_d.a(utilities.cpp.o): in function `gmx_fedisableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:144: warning: fedisableexcept is not implemented and will always fail /usr/bin/ld: ../../lib/libgromacs_mdrun_openmpi_d.a(utilities.cpp.o): in function `gmx_feenableexcept()': /builddir/build/BUILD/gromacs-2019.6/src/gromacs/math/utilities.cpp:115: warning: feenableexcept is not implemented and will always fail make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles 0 + popd ~/build/BUILD/gromacs-2019.6 + test -n openmpi + module unload mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.HP4YaY + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 127857 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C serial make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 1%] Built target clFFT /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 17%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 21%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/share/template /builddir/build/BUILD/gromacs-2019.6/serial/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 97%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 98%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-check.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-filter.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-covar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-helixorient.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-genion.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-select.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-nmr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-densorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-sham.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-x2top.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-anaeig.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-polystat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-freevolume.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-confrms.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-order.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-report-methods.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-awh.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-make_edi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-cluster.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-sigeps.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-do_dssp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-traj.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-mdmat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-genconf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-velacc.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-sans.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-eneconv.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-help.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-rotacf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-clustsize.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-energy.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-pairdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-mdrun.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-h2order.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-distance.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-chi.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-trjcat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-vanhove.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-helix.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-density.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-msd.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-spol.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-enemat.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-grompp.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-wham.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-trjorder.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-pme_error.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-densmap.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-rdf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-saltbr.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-analyze.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-view.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-disre.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-rama.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-nmens.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-rotmat.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-dipoles.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-editconf.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-bundle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-angle.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-bar.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-solvate.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-mindist.1 -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-saxs.1 -- Installing: 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/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/random/uniformrealdistribution.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/restraint/restraintpotential.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/timing/wallcycle.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/timing/walltime_accounting.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/atomprop.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/atoms.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/block.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/forcefieldparameters.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/idef.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/ifunc.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/index.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/mtop_util.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/symtab.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/topology/topology.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectory/energyframe.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectory/trajectoryframe.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/alignedallocator.h -- 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/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/datafilefinder.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/errorcodes.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/exceptions.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/fatalerror.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/flags.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/fileptr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/futil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/gmxassert.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/init.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/programcontext.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/real.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/smalloc.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/stringutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/unique_cptr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/confio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/enxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/filetypes.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/gmxfio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/matio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/mtxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/oenv.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/pdbio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/rgb.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/tpxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/trrio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/trxio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xdr_datatype.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xtcio.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xvgr.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/compat/make_unique.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/gmxana/gstat.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/nbsearch.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/indexutil.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/position.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectioncollection.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionenums.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoption.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoptionbehavior.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx-completion-gmx.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' '__LMOD_REF_COUNT_MODULEPATH=/etc/modulefiles:1\;/usr/share/modulefiles:1\;/usr/share/modulefiles/Linux:1\;/usr/share/modulefiles/Core:1\;/usr/share/lmod/lmod/modulefiles/Core:1;' export '__LMOD_REF_COUNT_MODULEPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ __LMOD_REF_COUNT_MODULEPATH='/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1' ++ export __LMOD_REF_COUNT_MODULEPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-riscv64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXttcGk9e1siZm4iXT0iL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9tcGkvbXBpY2gtcmlzY3Y2NCIsWyJmdWxsTmFtZSJdPSJtcGkvbXBpY2gtcmlzY3Y2NCIsWyJsb2FkT3JkZXIiXT0xLHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09Im1waS9tcGljaC1yaXNjdjY0Iix9LH0sbXBhdGhBPXsiL2V0Yy9tb2R1bGVmaWxlcyIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IiwiL3Vzci9zaGFyZS9t ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C mpich make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 2%] Built target clFFT /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 25%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' cd /builddir/build/BUILD/gromacs-2019.6/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/pbcutil/ishift.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gather.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gpu-types.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gpu-utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-program.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-solve.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-spread.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich' + test -n mpich + module unload mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-riscv64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C openmpi make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 2%] Built target clFFT /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 25%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' cd /builddir/build/BUILD/gromacs-2019.6/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/gpu_utils/device_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/gpu_utils/vectype_ops.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/pbcutil/ishift.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_consts.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel_pruneonly.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernel_utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels_fastgen.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/mdlib/nbnxn_ocl/nbnxn_ocl_kernels_fastgen_add_twincut.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gather.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gpu-types.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-gpu-utils.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-program.cl -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-solve.clh -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/opencl/gromacs/ewald/pme-spread.clh -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi' + test -n openmpi + module unload mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C serial_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 4%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 21%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template /builddir/build/BUILD/gromacs-2019.6/serial_d/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target template /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [ 98%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target view_objlib /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target gmx /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' cd /builddir/build/BUILD/gromacs-2019.6/serial_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial_d/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[2]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' [100%] Built target mdrun_test_objlib make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-check.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-select.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/man/man1/gmx-order.1 -- Up-to-date: 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/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/arraysize.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/cstringutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/current_function.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/datafilefinder.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/errorcodes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/fatalerror.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/flags.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/fileptr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/futil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/init.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/real.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/utility/unique_cptr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/confio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/enxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/gmxfio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/matio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/mtxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/rgb.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/trrio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xdr_datatype.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xtcio.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/fileio/xvgr.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/compat/make_unique.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/gmxana/gstat.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/position.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/include/gromacs/trajectoryanalysis/topologyinformation.h -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx_d -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx-completion.bash -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx-completion-gmx_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial_d' + test -n '' + for mpi in '' mpich openmpi + test -n mpich + module load mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/mpich-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/mpich/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/mpich-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/mpich-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/mpich/bin;' export 'MPI_BIN;' 'MPI_COMPILER=mpich-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/mpich;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/mpich-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/mpich/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/mpich-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON2_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON2_SITEARCH;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_PYTHON_SITEARCH=%\{python2_sitearch\}/mpich;' export 'MPI_PYTHON_SITEARCH;' 'MPI_SUFFIX=_mpich;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/mpich-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/mpich/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/mpich/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/mpich/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/mpich-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/mpich-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/mpich-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/mpich/bin ++ export MPI_BIN ++ MPI_COMPILER=mpich-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/mpich ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/mpich ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/mpich-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/mpich/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/mpich-riscv64 ++ export MPI_MAN ++ MPI_PYTHON2_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON2_SITEARCH ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/mpich ++ export MPI_PYTHON3_SITEARCH ++ MPI_PYTHON_SITEARCH='%{python2_sitearch}/mpich' ++ export MPI_PYTHON_SITEARCH ++ MPI_SUFFIX=_mpich ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/mpich-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/mpich/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/mpich/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/mpich/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/mpich/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/mpich-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=b2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C mpich_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/mpich_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' cd /builddir/build/BUILD/gromacs-2019.6/mpich_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs /builddir/build/BUILD/gromacs-2019.6/mpich_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/mpich_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/mpich_d' + test -n mpich + module unload mpi/mpich-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/mpich-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON2_SITEARCH;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_PYTHON_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON2_SITEARCH ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_PYTHON_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + for mpi in '' mpich openmpi + test -n openmpi + module load mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh load mpi/openmpi-riscv64 + eval '__LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1;' export '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' 'LD_LIBRARY_PATH=/usr/lib64/openmpi/lib;' export 'LD_LIBRARY_PATH;' '__LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT_LOADEDMODULES;' 'LOADEDMODULES=mpi/openmpi-riscv64;' export 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/man/openmpi-riscv64:1\;/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' 'MPI_BIN=/usr/lib64/openmpi/bin;' export 'MPI_BIN;' 'MPI_COMPILER=openmpi-riscv64;' export 'MPI_COMPILER;' 'MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi;' export 'MPI_FORTRAN_MOD_DIR;' 'MPI_HOME=/usr/lib64/openmpi;' export 'MPI_HOME;' 'MPI_INCLUDE=/usr/include/openmpi-riscv64;' export 'MPI_INCLUDE;' 'MPI_LIB=/usr/lib64/openmpi/lib;' export 'MPI_LIB;' 'MPI_MAN=/usr/share/man/openmpi-riscv64;' export 'MPI_MAN;' 'MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi;' export 'MPI_PYTHON3_SITEARCH;' 'MPI_SUFFIX=_openmpi;' export 'MPI_SUFFIX;' 'MPI_SYSCONFIG=/etc/openmpi-riscv64;' export 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/lib64/openmpi/bin:1\;/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig:1\;/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' '__LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1;' export '__LMOD_REF_COUNT__LMFILES_;' '_LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64;' export '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ==;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ __LMOD_REF_COUNT_LD_LIBRARY_PATH=/usr/lib64/openmpi/lib:1 ++ export __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ LD_LIBRARY_PATH=/usr/lib64/openmpi/lib ++ export LD_LIBRARY_PATH ++ __LMOD_REF_COUNT_LOADEDMODULES=mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT_LOADEDMODULES ++ LOADEDMODULES=mpi/openmpi-riscv64 ++ export LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH='/usr/share/man/openmpi-riscv64:1;/usr/share/lmod/lmod/share/man:1' ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=:/usr/share/man/openmpi-riscv64:/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ MPI_BIN=/usr/lib64/openmpi/bin ++ export MPI_BIN ++ MPI_COMPILER=openmpi-riscv64 ++ export MPI_COMPILER ++ MPI_FORTRAN_MOD_DIR=/usr/lib64/gfortran/modules/openmpi ++ export MPI_FORTRAN_MOD_DIR ++ MPI_HOME=/usr/lib64/openmpi ++ export MPI_HOME ++ MPI_INCLUDE=/usr/include/openmpi-riscv64 ++ export MPI_INCLUDE ++ MPI_LIB=/usr/lib64/openmpi/lib ++ export MPI_LIB ++ MPI_MAN=/usr/share/man/openmpi-riscv64 ++ export MPI_MAN ++ MPI_PYTHON3_SITEARCH=/usr/lib64/python3.8/site-packages/openmpi ++ export MPI_PYTHON3_SITEARCH ++ MPI_SUFFIX=_openmpi ++ export MPI_SUFFIX ++ MPI_SYSCONFIG=/etc/openmpi-riscv64 ++ export MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/lib64/openmpi/bin:1;/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/lib64/openmpi/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/openmpi/lib/pkgconfig:1;/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=/usr/lib64/openmpi/lib/pkgconfig::/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ __LMOD_REF_COUNT__LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64:1 ++ export __LMOD_REF_COUNT__LMFILES_ ++ _LMFILES_=/usr/share/modulefiles/mpi/openmpi-riscv64 ++ export _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=aGFyZS9tb2R1bGVmaWxlcy9Db3JlIiwiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ== ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 'INSTALL=/usr/bin/install -p' -C openmpi_d make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/openmpi_d --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 1%] Built target libgromacs_external /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 24%] Built target libgromacs_generated /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [ 98%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun_objlib /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' cd /builddir/build/BUILD/gromacs-2019.6/openmpi_d && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs /builddir/build/BUILD/gromacs-2019.6/openmpi_d/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[2]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' [100%] Built target mdrun make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/openmpi_d/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/gromacs/COPYING -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi_d -- Installing: /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/openmpi_d' + test -n openmpi + module unload mpi/openmpi-riscv64 ++ /usr/share/lmod/lmod/libexec/lmod sh unload mpi/openmpi-riscv64 + eval unset '__LMOD_REF_COUNT_LD_LIBRARY_PATH;' unset 'LD_LIBRARY_PATH;' unset '__LMOD_REF_COUNT_LOADEDMODULES;' unset 'LOADEDMODULES;' '__LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1;' export '__LMOD_REF_COUNT_MANPATH;' 'MANPATH=/usr/share/lmod/lmod/share/man;' export 'MANPATH;' 'MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core;' export 'MODULEPATH;' unset 'MPI_BIN;' unset 'MPI_COMPILER;' unset 'MPI_FORTRAN_MOD_DIR;' unset 'MPI_HOME;' unset 'MPI_INCLUDE;' unset 'MPI_LIB;' unset 'MPI_MAN;' unset 'MPI_PYTHON3_SITEARCH;' unset 'MPI_SUFFIX;' unset 'MPI_SYSCONFIG;' '__LMOD_REF_COUNT_PATH=/usr/bin:1\;/bin:1\;/usr/sbin:1\;/sbin:1\;/usr/local/sbin:1;' export '__LMOD_REF_COUNT_PATH;' 'PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin;' export 'PATH;' '__LMOD_REF_COUNT_PKG_CONFIG_PATH=/usr/lib64/pkgconfig:1\;/usr/share/pkgconfig:1;' export '__LMOD_REF_COUNT_PKG_CONFIG_PATH;' 'PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig;' export 'PKG_CONFIG_PATH;' unset '__LMOD_REF_COUNT__LMFILES_;' unset '_LMFILES_;' '_ModuleTable001_=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;' export '_ModuleTable001_;' '_ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0=;' export '_ModuleTable002_;' '_ModuleTable_Sz_=2;' export '_ModuleTable_Sz_;' ++ unset __LMOD_REF_COUNT_LD_LIBRARY_PATH ++ unset LD_LIBRARY_PATH ++ unset __LMOD_REF_COUNT_LOADEDMODULES ++ unset LOADEDMODULES ++ __LMOD_REF_COUNT_MANPATH=/usr/share/lmod/lmod/share/man:1 ++ export __LMOD_REF_COUNT_MANPATH ++ MANPATH=/usr/share/lmod/lmod/share/man ++ export MANPATH ++ MODULEPATH=/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ++ export MODULEPATH ++ unset MPI_BIN ++ unset MPI_COMPILER ++ unset MPI_FORTRAN_MOD_DIR ++ unset MPI_HOME ++ unset MPI_INCLUDE ++ unset MPI_LIB ++ unset MPI_MAN ++ unset MPI_PYTHON3_SITEARCH ++ unset MPI_SUFFIX ++ unset MPI_SYSCONFIG ++ __LMOD_REF_COUNT_PATH='/usr/bin:1;/bin:1;/usr/sbin:1;/sbin:1;/usr/local/sbin:1' ++ export __LMOD_REF_COUNT_PATH ++ PATH=/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin ++ export PATH ++ __LMOD_REF_COUNT_PKG_CONFIG_PATH='/usr/lib64/pkgconfig:1;/usr/share/pkgconfig:1' ++ export __LMOD_REF_COUNT_PKG_CONFIG_PATH ++ PKG_CONFIG_PATH=:/usr/lib64/pkgconfig:/usr/share/pkgconfig ++ export PKG_CONFIG_PATH ++ unset __LMOD_REF_COUNT__LMFILES_ ++ unset _LMFILES_ ++ _ModuleTable001_=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 ++ export _ModuleTable001_ ++ _ModuleTable002_=cmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0= ++ export _ModuleTable002_ ++ _ModuleTable_Sz_=2 ++ export _ModuleTable_Sz_ + mkdir -p /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/doc/gromacs + install -pm 644 AUTHORS COPYING README /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/doc/gromacs + install -cpm 644 serial/docs/manual/gromacs.pdf /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/doc/gromacs/manual.pdf + install -cpm 644 /builddir/build/SOURCES/gromacs-README.fedora /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/share/doc/gromacs/README.fedora + pushd /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 ~/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64 ~/build/BUILD/gromacs-2019.6 + rm .//usr/bin/GMXRC .//usr/bin/GMXRC.bash .//usr/bin/GMXRC.csh .//usr/bin/GMXRC.zsh + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/demux.pl .//usr/bin/g_demux.pl + for bin in demux.pl xplor2gmx.pl + mv .//usr/bin/xplor2gmx.pl .//usr/bin/g_xplor2gmx.pl + mkdir -p .//usr/share/bash-completion/completions + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx.bash + rm .//usr/bin/gmx-completion-gmx.bash + for bin in gmx{,_d} + cat .//usr/bin/gmx-completion.bash .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion-gmx_d.bash + rm .//usr/bin/gmx-completion.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich.bash .//usr/lib64/mpich/bin/gmx-completion-mdrun_mpich_d.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi.bash .//usr/lib64/openmpi/bin/gmx-completion-mdrun_openmpi_d.bash + /usr/lib/rpm/find-debuginfo.sh -j8 --strict-build-id -m -i --build-id-seed 2019.6-2.fc33 --unique-debug-suffix -2019.6-2.fc33.riscv64 --unique-debug-src-base gromacs-2019.6-2.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/gromacs-2019.6 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/libgromacs_d.so.4.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/libgromacs.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/libgromacs_d.so.4.0.0 extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/libgromacs.so.4.0.0 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/bin/gmx_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich_d explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/mpich/bin/mdrun_mpich_d extracting debug info from /builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64/openmpi/bin/mdrun_openmpi_d original debug info size: 574292kB, size after compression: 370560kB /usr/lib/rpm/sepdebugcrcfix: Updated 8 CRC32s, 0 CRC32s did match. cpio: serial/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.h: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/parser.y: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.cpp: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner.l: Cannot stat: No such file or directory cpio: serial_d/src/gromacs/scanner_flex.h: Cannot stat: No such file or directory 46789 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.cs1TKX + umask 022 + cd /builddir/build/BUILD + cd gromacs-2019.6 + . /etc/profile.d/modules.sh ++ . /etc/profile.d/00-modulepath.sh +++ '[' -z /etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core ']' +++ : ++ '[' -z '' ']' ++ '[' -z /usr/share/modulefiles ']' ++ findExec PS_CMD /usr/bin/ps ps ++ Nm=PS_CMD ++ confPath=/usr/bin/ps ++ execNm=ps ++ eval PS_CMD=/usr/bin/ps +++ PS_CMD=/usr/bin/ps ++ '[' '!' -x /usr/bin/ps ']' ++ unset Nm confPath execNm ++ findExec EXPR_CMD /usr/bin/expr expr ++ Nm=EXPR_CMD ++ confPath=/usr/bin/expr ++ execNm=expr ++ eval EXPR_CMD=/usr/bin/expr +++ EXPR_CMD=/usr/bin/expr ++ '[' '!' -x /usr/bin/expr ']' ++ unset Nm confPath execNm ++ findExec BASENAME_CMD /usr/bin/basename basename ++ Nm=BASENAME_CMD ++ confPath=/usr/bin/basename ++ execNm=basename ++ eval BASENAME_CMD=/usr/bin/basename +++ BASENAME_CMD=/usr/bin/basename ++ '[' '!' -x /usr/bin/basename ']' ++ unset Nm confPath execNm ++ unset -f findExec +++ /usr/bin/ps -p 129299 -ocomm= ++ my_shell=sh +++ /usr/bin/expr sh : '-*\(.*\)' ++ my_shell=sh +++ /usr/bin/basename sh ++ my_shell=sh ++ '[' -f /usr/share/lmod/lmod/init/sh ']' ++ source /usr/share/lmod/lmod/init/sh +++ LMOD_ROOT=/usr/share/lmod +++ LMOD_PKG=/usr/share/lmod/lmod +++ LMOD_DIR=/usr/share/lmod/lmod/libexec/ +++ LMOD_CMD=/usr/share/lmod/lmod/libexec/lmod +++ MODULESHOME=/usr/share/lmod/lmod +++ export LMOD_CMD +++ export LMOD_PKG +++ export LMOD_DIR +++ export MODULESHOME +++ export LMOD_DIR ++ unset my_shell PS_CMD EXPR_CMD BASENAME_CMD MODULEPATH_INIT + for p in '' _d + for mpi in '' mpich openmpi + test -n '' + test -n '' + xLD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64 + LD_LIBRARY_PATH=/builddir/build/BUILDROOT/gromacs-2019.6-2.fc33.riscv64/usr/lib64 + make -C serial VERBOSE=1 -j8 check make: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 check make[1]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' /usr/bin/cmake -S/builddir/build/BUILD/gromacs-2019.6 -B/builddir/build/BUILD/gromacs-2019.6/serial --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/gromacs-2019.6/serial/CMakeFiles 87 make -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all make[2]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/depend make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/depend make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/depend make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/clFFT/src /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_external.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/CMakeFiles/libgromacs_generated.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build.make src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest/CMakeFiles/gmock.dir/depend.internal". make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/CMakeFiles/libgromacs_external.dir/build.make src/gromacs/CMakeFiles/libgromacs_external.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/clFFT-build/CMakeFiles/clFFT.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_external.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/CMakeFiles/libgromacs_generated.dir/build.make src/gromacs/CMakeFiles/libgromacs_generated.dir/build [ 1%] Built target clFFT make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend [ 1%] Built target mdrun_objlib make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 4%] Built target libgromacs_external make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target gmock [ 5%] Built target mdrun_test_objlib make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/external/googletest/CMakeFiles/gmock.dir/build.make src/external/googletest/CMakeFiles/gmock.dir/build [ 6%] Built target view_objlib make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/onlinehelp/tests/mock_helptopic.cpp Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend.internal". make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs_generated.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 6%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/src/gmock-all.cc [ 6%] Building CXX object src/external/googletest/CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -Wno-unused-variable -o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o -c /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/src/gtest-all.cc [ 19%] Built target libgromacs_generated make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend Scanning dependencies of target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build Scanning dependencies of target analysisdata-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 19%] Building CXX object src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp [ 19%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o [ 19%] Building CXX object src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/mock_datamodule.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/analysisdata/tests/datatest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs /builddir/build/BUILD/gromacs-2019.6/serial 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Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/tests/CMakeFiles/gmxtests.dir/depend.internal". Scanning dependencies of target gmxtests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f tests/CMakeFiles/gmxtests.dir/build.make tests/CMakeFiles/gmxtests.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Nothing to be done for 'tests/CMakeFiles/gmxtests.dir/build'. make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target gmxtests make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target onlinehelp-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target mdrunutility-test-shared make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target analysisdata-test-shared [ 79%] Linking CXX static library ../../../lib/libgmock.a cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/gromacs-2019.6/serial/src/external/googletest && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/googlemock/src/gmock-all.cc.o CMakeFiles/gmock.dir/googletest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Built target gmock make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/testutils /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/testutils.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/CMakeFiles/testutils.dir/depend.internal". Scanning dependencies of target testutils make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/cmdlinetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/cmdlinetest.cpp [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/filematchers.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/filematchers.cpp [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/conftest.cpp.o [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/interactivetest.cpp [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/loggertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/conftest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/conftest.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/loggertest.cpp [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/refdata.cpp.o [ 79%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/refdata.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/refdata.cpp cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/mpitest.cpp [ 80%] Building CXX object src/testutils/CMakeFiles/testutils.dir/mpi-printer.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/mpi-printer.cpp [ 80%] Building CXX object src/testutils/CMakeFiles/testutils.dir/refdata-xml.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem 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src/testutils/CMakeFiles/testutils.dir/stringtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/stringtest.cpp [ 80%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testfilemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/testasserts.cpp [ 80%] Building CXX object src/testutils/CMakeFiles/testutils.dir/testfileredirector.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem 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src/testutils/CMakeFiles/testutils.dir/testoptions.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o 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--verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testmatchers.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[3]: Leaving directory 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/builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/gromacs-2019.6 /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Dependee "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend.internal". Scanning dependencies of target testutils-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target listed-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target testutils-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build Scanning dependencies of target applied-forces-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target domdec-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build Scanning dependencies of target mdlib-test make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/mpitest.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' Scanning dependencies of target mdrun-mpi-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/bonded.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/listed-forces/tests/bonded.cpp [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/interactivetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/interactivetest.cpp [ 81%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/electricfield.cpp.o make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/applied-forces/tests/electricfield.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/hashedmap.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/domdec-test.dir/hashedmap.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/hashedmap.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/calc_verletbuf.cpp Scanning dependencies of target commandline-test make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build [ 81%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/domain_decomposition.cpp make[3]: Entering directory '/builddir/build/BUILD/gromacs-2019.6/serial' [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp [ 81%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/minimize.cpp [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/mdebin.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/mdebin.cpp [ 81%] Building CXX object src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/domdec/tests/localatomsetmanager.cpp [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/refdata_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm [ 81%] Building CXX object src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 81%] Linking CXX executable ../../../../bin/listed-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm ../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make:125: bin/testutils-mpi-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3721: src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/all] Error 2 make[2]: *** Waiting for unfinished jobs.... [ 81%] Building CXX object src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/domdec/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/settle.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/settle.cpp ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' [ 81%] Linking CXX executable ../../../../bin/applied-forces-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm collect2: error: ld returned 1 exit status make[3]: *** [src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make:125: bin/listed-forces-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3947: src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/all] Error 2 [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp [ 81%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp [ 81%] Linking CXX executable ../../../../bin/domdec-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/domdec/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/domdec-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/domdec-test.dir/hashedmap.cpp.o CMakeFiles/domdec-test.dir/localatomsetmanager.cpp.o CMakeFiles/domdec-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/domdec-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make:125: bin/applied-forces-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3918: src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/all] Error 2 [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/testasserts_tests.cpp ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/build.make:140: bin/domdec-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:4006: src/gromacs/domdec/tests/CMakeFiles/domdec-test.dir/all] Error 2 [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/shake.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/shake.cpp [ 81%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/mimic.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/simulationsignal.cpp [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/tests/xvgtest_tests.cpp [ 81%] Building CXX object src/testutils/tests/CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/testutils/../external/tinyxml2 -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroups.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/updategroups.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroups.cpp [ 81%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisim.cpp [ 81%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/mdlib/tests/updategroupscog.cpp [ 82%] Building CXX object src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineparser.cpp [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp [ 83%] Linking CXX executable ../../../bin/testutils-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.4.0.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/pargs.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/gromacs/commandline/tests/pargs.cpp [ 83%] Building CXX object src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests/Testing/Temporary\" -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp ../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/testutils/tests/CMakeFiles/testutils-test.dir/build.make:170: bin/testutils-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3750: src/testutils/tests/CMakeFiles/testutils-test.dir/all] Error 2 [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/multisimtest.cpp [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/pmetest.cpp [ 83%] Linking CXX executable ../../../../bin/mdlib-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/updategroups.cpp.o CMakeFiles/mdlib-test.dir/updategroupscog.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/programs/mdrun/tests/replicaexchange.cpp [ 83%] Building CXX object src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/builddir/build/BUILD/gromacs-2019.6/serial/src -I/builddir/build/BUILD/gromacs-2019.6/src -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googletest/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/googletest/googlemock/include -isystem /builddir/build/BUILD/gromacs-2019.6/src/external/thread_mpi/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-comment -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /builddir/build/BUILD/gromacs-2019.6/src/testutils/unittest_main.cpp ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make:215: bin/mdlib-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3889: src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/all] Error 2 [ 83%] Linking CXX executable ../../../../bin/commandline-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm [ 83%] Linking CXX executable ../../../../bin/mdrun-mpi-test cd /builddir/build/BUILD/gromacs-2019.6/serial/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/minimize.cpp.o CMakeFiles/mdrun-mpi-test.dir/mimic.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/pmetest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/energycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/simulationdatabase.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectorycomparison.cpp.o CMakeFiles/mdrun_test_objlib.dir/trajectoryreader.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.4.0.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make:217: bin/commandline-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:3977: src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/all] Error 2 ../../../../lib/libtestutils.a(tinyxml2.cpp.o): in function `.L0 ': /usr/include/bits/stdio2.h:70:(.text+0x11de): relocation truncated to fit: R_RISCV_PCREL_HI20 against `.LC13' collect2: error: ld returned 1 exit status make[3]: *** [src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make:231: bin/mdrun-mpi-test] Error 1 make[3]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[2]: *** [CMakeFiles/Makefile2:5221: src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/all] Error 2 make[2]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make[1]: *** [CMakeFiles/Makefile2:2116: CMakeFiles/check.dir/rule] Error 2 make[1]: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' make: *** [Makefile:272: check] Error 2 make: Leaving directory '/builddir/build/BUILD/gromacs-2019.6/serial' error: Bad exit status from /var/tmp/rpm-tmp.cs1TKX (%check) RPM build errors: Bad exit status from /var/tmp/rpm-tmp.cs1TKX (%check) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.8/site-packages/mockbuild/trace_decorator.py", line 95, in trace result = func(*args, **kw) File "/usr/lib/python3.8/site-packages/mockbuild/util.py", line 746, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/gromacs.spec