Mock Version: 1.4.21 Mock Version: 1.4.21 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'], chrootPath='/var/lib/mock/f33-build-374683-61583/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1595808000 Wrote: /builddir/build/SRPMS/R-IRanges-2.22.2-2.fc33.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'], chrootPath='/var/lib/mock/f33-build-374683-61583/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=987gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/R-IRanges.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1595808000 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.sBeFvm + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf IRanges + /usr/bin/mkdir -p IRanges + cd IRanges + /usr/bin/tar -xof - + /usr/bin/gzip -dc /builddir/build/SOURCES/IRanges_2.22.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.aEcdSo + umask 022 + cd /builddir/build/BUILD + cd IRanges + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.LTmfKl + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 ++ dirname /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 + cd IRanges + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 + mkdir -p /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library + R CMD INSTALL IRanges -l /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library * installing *source* package 'IRanges' ... ** using staged installation ** libs gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c CompressedList_class.c -o CompressedList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Grouping_class.c -o Grouping_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IPosRanges_comparison.c -o IPosRanges_comparison.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_class.c -o IRanges_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c IRanges_constructor.c -o IRanges_constructor.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c NCList.c -o NCList.o NCList.c:1173:13: warning: 'NCList_get_y_overlaps_rec' defined but not used [-Wunused-function] 1173 | static void NCList_get_y_overlaps_rec(const NCList *x_nclist, | ^~~~~~~~~~~~~~~~~~~~~~~~~ NCList.c:202:22: warning: 'next_top_down' defined but not used [-Wunused-function] 202 | static const NCList *next_top_down(const NCList *nclist) | ^~~~~~~~~~~~~ NCList.c: In function 'NCListAsINTSXP_print': NCList.c:674:23: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] 674 | sprintf(format, "%c0%d%c", '%', max_digits, 'd'); | ^~ NCList.c:674:19: note: directive argument in the range [-2147483647, 2147483647] 674 | sprintf(format, "%c0%d%c", '%', max_digits, 'd'); | ^~~~~~~~~ In file included from /usr/include/stdio.h:866, from /usr/include/R/Rinternals.h:39, from /usr/include/R/Rdefines.h:40, from /usr/lib64/R/library/S4Vectors/include/S4Vectors_defines.h:18, from ../inst/include/IRanges_defines.h:18, from IRanges.h:1, from NCList.c:5: /usr/include/bits/stdio2.h:38:10: note: '__sprintf_chk' output between 5 and 15 bytes into a destination of size 10 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c R_init_IRanges.c -o R_init_IRanges.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c Ranges_class.c -o Ranges_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c RleViews_utils.c -o RleViews_utils.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c S4Vectors_stubs.c -o S4Vectors_stubs.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c coverage_methods.c -o coverage_methods.o coverage_methods.c: In function 'compute_coverage_from_IRanges_holder': coverage_methods.c:503:28: warning: 'x_end' may be used uninitialized in this function [-Wmaybe-uninitialized] 503 | if (*out_ranges_are_tiles && x_end != cvg_len) | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ coverage_methods.c:419:21: note: 'x_end' was declared here 419 | i, j, x_start, x_end, shift_elt, tmp; | ^~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c extractListFragments.c -o extractListFragments.o extractListFragments.c: In function 'find_partition_overlaps': extractListFragments.c:66:5: warning: 'split_partitions_buf' may be used uninitialized in this function [-Wmaybe-uninitialized] 66 | IntAE_insert_at(split_partitions_buf, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 | IntAE_get_nelt(split_partitions_buf), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | q_prev_end); | ~~~~~~~~~~~ gcc -I"/usr/include/R" -DNDEBUG -I'/usr/lib64/R/library/S4Vectors/include' -I/usr/local/include -fpic -O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -c inter_range_methods.c -o inter_range_methods.o gcc -shared -L/usr/lib64/R/lib -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/usr/lib64/R/lib -lR installing to /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library/00LOCK-IRanges/00new/IRanges/libs ** R ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'drop' from package 'base' in package 'IRanges' Creating a generic function for 'runmed' from package 'stats' in package 'IRanges' Creating a generic function for 'chartr' from package 'base' in package 'IRanges' Creating a generic function for 'toupper' from package 'base' in package 'IRanges' Creating a generic function for 'tolower' from package 'base' in package 'IRanges' Creating a generic function for 'sub' from package 'base' in package 'IRanges' Creating a generic function for 'gsub' from package 'base' in package 'IRanges' Creating a generic function for 'startsWith' from package 'base' in package 'IRanges' Creating a generic function for 'endsWith' from package 'base' in package 'IRanges' Creating a generic function for 'smoothEnds' from package 'stats' in package 'IRanges' ** help *** installing help indices converting help for package 'IRanges' finding HTML links ... done AtomicList-class html finding level-2 HTML links ... done Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/AtomicList-class.Rd:307: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic AtomicList-utils html CompressedHitsList-class html CompressedList-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:38: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:39: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:44: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:60: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:66: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:81: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:84: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:87: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:89: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:95: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:100: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:105: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:110: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:118: file link 'classNameForDisplay' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:124: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/CompressedList-class.Rd:127: file link 'SimpleList' in package 'S4Vectors' does not exist and so has been treated as a topic DataFrame-utils html DataFrameList-class html Grouping-class html Hits-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:31: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Hits-class-leftovers.Rd:68: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic IPos-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPos-class.Rd:122: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPos-class.Rd:192: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic IPosRanges-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPosRanges-class.Rd:198: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IPosRanges-class.Rd:223: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic IPosRanges-comparison html IRanges-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IRanges-class.Rd:97: file link 'c' in package 'S4Vectors' does not exist and so has been treated as a topic IRanges-constructor html IRanges-internals html IRanges-utils html IRangesList-class html IntegerRanges-class html IntegerRangesList-class html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IntegerRangesList-class.Rd:76: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IntegerRangesList-class.Rd:76: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IntegerRangesList-class.Rd:77: missing file link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/IntegerRangesList-class.Rd:77: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic List-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:11: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/List-class-leftovers.Rd:35: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic MaskCollection-class html NCList-class html RangedData-class html RangedSelection-class html Rle-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:22: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Rle-class-leftovers.Rd:71: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic RleViews-class html RleViewsList-class html Vector-class-leftovers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:29: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/Vector-class-leftovers.Rd:109: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Views-class html ViewsList-class html coverage-methods html extractList html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:79: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:129: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:140: file link 'unsplit' in package 'base' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:143: file link 'split' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:146: file link 'Vector' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:146: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:147: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:147: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:149: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractList.Rd:150: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic extractListFragments html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractListFragments.Rd:87: file link 'relistToClass' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/extractListFragments.Rd:107: file link 'List' in package 'S4Vectors' does not exist and so has been treated as a topic findOverlaps-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:169: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:177: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:189: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:189: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:247: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:247: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:255: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:256: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:287: file link 'Hits' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/findOverlaps-methods.Rd:287: file link 'HitsList' in package 'S4Vectors' does not exist and so has been treated as a topic inter-range-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/inter-range-methods.Rd:266: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic intra-range-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:94: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:102: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:123: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:136: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:146: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:160: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:188: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:297: missing link 'RangesList' Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/intra-range-methods.Rd:307: file link 'endoapply' in package 'S4Vectors' does not exist and so has been treated as a topic multisplit html nearest-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/nearest-methods.Rd:148: file link 'breakTies' in package 'S4Vectors' does not exist and so has been treated as a topic range-squeezers html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/range-squeezers.Rd:37: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic read.Mask html reverse-methods html seqapply html setops-methods html Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:91: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:116: file link 'Pairs' in package 'S4Vectors' does not exist and so has been treated as a topic Rd warning: /builddir/build/BUILD/IRanges/IRanges/man/setops-methods.Rd:165: file link 'mendoapply' in package 'S4Vectors' does not exist and so has been treated as a topic slice-methods html view-summarization-methods html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (IRanges) + test -d IRanges/src + cd IRanges/src + rm -f CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o IRanges.so + rm -rf /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library/R.css + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 2.22.2-2.fc33 --unique-debug-suffix -2.22.2-2.fc33.riscv64 --unique-debug-src-base R-IRanges-2.22.2-2.fc33.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/IRanges explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library/IRanges/libs/IRanges.so extracting debug info from /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64/usr/lib64/R/library/IRanges/libs/IRanges.so original debug info size: 1084kB, size after compression: 1068kB /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. 348 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.rjiklm + umask 022 + cd /builddir/build/BUILD + cd IRanges + RPM_EC=0 ++ jobs -p + exit 0 Processing files: R-IRanges-2.22.2-2.fc33.riscv64 Provides: R(IRanges) = 2.22.2 R-IRanges = 2.22.2-2.fc33 R-IRanges(riscv-64) = 2.22.2-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: R(ABI) = 4.0 R(BiocGenerics) >= 0.25.3 R(S4Vectors) >= 0.25.14 R(methods) R(stats) R(stats4) R(utils) R-core >= 3.1.0 ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libR.so()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) rtld(GNU_HASH) Suggests: R(BSgenome.Celegans.UCSC.ce2) R(BiocStyle) R(GenomicAlignments) R(GenomicFeatures) R(GenomicRanges) R(RUnit) R(Rsamtools) R(XVector) R(pasillaBamSubset) Processing files: R-IRanges-devel-2.22.2-2.fc33.riscv64 Provides: R-IRanges-devel = 2.22.2-2.fc33 R-IRanges-devel(riscv-64) = 2.22.2-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-IRanges-debugsource-2.22.2-2.fc33.riscv64 Provides: R-IRanges-debugsource = 2.22.2-2.fc33 R-IRanges-debugsource(riscv-64) = 2.22.2-2.fc33 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: R-IRanges-debuginfo-2.22.2-2.fc33.riscv64 Provides: R-IRanges-debuginfo = 2.22.2-2.fc33 R-IRanges-debuginfo(riscv-64) = 2.22.2-2.fc33 debuginfo(build-id) = 85a946510a01d6987f27460f7c32e9b486f770ee Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: R-IRanges-debugsource(riscv-64) = 2.22.2-2.fc33 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 Wrote: /builddir/build/RPMS/R-IRanges-devel-2.22.2-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/R-IRanges-debugsource-2.22.2-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/R-IRanges-debuginfo-2.22.2-2.fc33.riscv64.rpm Wrote: /builddir/build/RPMS/R-IRanges-2.22.2-2.fc33.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.FzrIcm + umask 022 + cd /builddir/build/BUILD + cd IRanges + /usr/bin/rm -rf /builddir/build/BUILDROOT/R-IRanges-2.22.2-2.fc33.riscv64 + RPM_EC=0 ++ jobs -p + exit 0 Child return code was: 0