Mock Version: 1.4.14 Mock Version: 1.4.14 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/f31-build-112048-34230/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564012800 Wrote: /builddir/build/SRPMS/moose-3.1.4-6.fc31.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/moose.spec'], chrootPath='/var/lib/mock/f31-build-112048-34230/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=432000uid=986gid=135user='mockbuild'nspawn_args=[]unshare_net=TrueprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/moose.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1564012800 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.1ZJXRE + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf moose-core-3.1.4 + /usr/bin/gzip -dc /builddir/build/SOURCES/moose-core-3.1.4.tar.gz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd moose-core-3.1.4 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + /usr/bin/cat /builddir/build/SOURCES/0001-Avoid-open-coded-strdup-that-cause-compilation-failu.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0002-Avoid-open-coded-strdup-that-causes-a-warning.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0003-Use-sys.executable-to-execute-test.-It-breaks-on-pyt.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + /usr/bin/cat /builddir/build/SOURCES/0004-Do-not-try-to-access-position-1-in-string.patch + /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.cByujE + umask 022 + cd /builddir/build/BUILD + cd moose-core-3.1.4 + cmake_opts=(-DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON -DCMAKE_C_FLAGS="-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection" -DCMAKE_CXX_FLAGS="-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection" -DCMAKE_EXE_LINKER_FLAGS="$LDFLAGS -Wl,--build-id" -DCMAKE_MODULE_LINKER_FLAGS="$LDFLAGS -Wl,--build-id" -DVERSION_MOOSE=3.1.4 -DCMAKE_BUILD_TYPE="Release|RelWithDebugInfo" -DCMAKE_INSTALL_DO_STRIP=0 -DPYTHON_EXECUTABLE=/usr/bin/python3) + mkdir -p build + pushd build ~/build/BUILD/moose-core-3.1.4/build ~/build/BUILD/moose-core-3.1.4 + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + export LDFLAGS + /usr/bin/cmake -DCMAKE_C_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_CXX_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_Fortran_FLAGS_RELEASE:STRING=-DNDEBUG -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DCMAKE_INSTALL_PREFIX:PATH=/usr -DINCLUDE_INSTALL_DIR:PATH=/usr/include -DLIB_INSTALL_DIR:PATH=/usr/lib64 -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DLIB_SUFFIX=64 -DBUILD_SHARED_LIBS:BOOL=ON .. -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=ON '-DCMAKE_C_FLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' '-DCMAKE_CXX_FLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' '-DCMAKE_EXE_LINKER_FLAGS= -Wl,--build-id' '-DCMAKE_MODULE_LINKER_FLAGS= -Wl,--build-id' -DVERSION_MOOSE=3.1.4 '-DCMAKE_BUILD_TYPE=Release|RelWithDebugInfo' -DCMAKE_INSTALL_DO_STRIP=0 -DPYTHON_EXECUTABLE=/usr/bin/python3 -- The C compiler identification is GNU 9.2.1 -- The CXX compiler identification is GNU 9.2.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done BUILDSTDERR: CMake Deprecation Warning at CMakeLists.txt:11 (cmake_policy): BUILDSTDERR: The OLD behavior for policy CMP0050 will be removed from a future version BUILDSTDERR: of CMake. BUILDSTDERR: The cmake-policies(7) manual explains that the OLD behaviors of all BUILDSTDERR: policies are deprecated and that a policy should be set to OLD only under BUILDSTDERR: specific short-term circumstances. Projects should be ported to the NEW BUILDSTDERR: behavior and not rely on setting a policy to OLD. -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success -- Performing Test COMPILER_SUPPORTS_CXX0X -- Performing Test COMPILER_SUPPORTS_CXX0X - Success -- Performing Test COMPILER_WARNS_STRICT_ALIASING -- Performing Test COMPILER_WARNS_STRICT_ALIASING - Success -- Performing Test COMPILER_SUPPORT_UNUSED_BUT_SET_VARIABLE_NO_WARN -- Performing Test COMPILER_SUPPORT_UNUSED_BUT_SET_VARIABLE_NO_WARN - Success -- Your compiler supports c++11 features. Enabling it -- Found PkgConfig: /usr/bin/pkg-config (found version "1.6.3") -- Couldn't fetch version from git repo -- MOOSE Version 3.1.4 -- | Writing 3.1.4 to /builddir/build/BUILD/moose-core-3.1.4/python/VERSION -- Operating system: Linux -- Building for Release/No unit tests. -- GSL version : 2.5 -- Found GSL /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so -- HDF5: Using hdf5 compiler wrapper to determine CXX configuration -- Found HDF5: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so (found version "1.10.5") found components: CXX HL -- MOOSE will use following HDF5 /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libhdf5_hl_cpp.so;/usr/lib64/libhdf5_hl.so -- Using gsl libraries: /usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so -- Shared libs: /usr/lib64/libhdf5_cpp.so;/usr/lib64/libhdf5.so;/usr/lib64/libsz.so;/usr/lib64/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libhdf5_hl_cpp.so;/usr/lib64/libhdf5_hl.so;/usr/lib64/libgsl.so;/usr/lib64/libgslcblas.so -- Found PythonInterp: /usr/bin/python3 (found version "3.7.4") -- Python so extension .so -- DEBUG: Python_ADDITIONAL_VERSIONS 2.6 2.7 -- Found NumPy: version "1.15.0" /usr/lib64/python3.7/site-packages/numpy/core/include -- Python include flags: -I/usr/include/python3.7m -I/usr/include/python3.7m -- Platform: Linux-5.2.0-0.rc7.git0.1.0.riscv64.fc31.riscv64-riscv64-with-fedora-31-Rawhide -- binary distribution file /builddir/build/BUILD/moose-core-3.1.4/build/bdist/pymoose-3.1.4.CMAKE.tar.gz BUILDSTDERR: ======================================= BUILDSTDERR: If cmake did not report any error, run BUILDSTDERR: 'make' to build MOOSE BUILDSTDERR: ======================================= -- Configuring done -- Generating done BUILDSTDERR: CMake Warning: BUILDSTDERR: Manually-specified variables were not used by the project: BUILDSTDERR: CMAKE_C_FLAGS_RELEASE BUILDSTDERR: CMAKE_Fortran_FLAGS_RELEASE BUILDSTDERR: CMAKE_INSTALL_DO_STRIP BUILDSTDERR: INCLUDE_INSTALL_DIR BUILDSTDERR: LIB_INSTALL_DIR BUILDSTDERR: LIB_SUFFIX BUILDSTDERR: SHARE_INSTALL_PREFIX BUILDSTDERR: SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/moose-core-3.1.4/build + /usr/bin/make -O -j4 V=1 VERBOSE=1 VERBOSE=1 /usr/bin/cmake -S/builddir/build/BUILD/moose-core-3.1.4 -B/builddir/build/BUILD/moose-core-3.1.4/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles /builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/depend /usr/bin/make -f external/muparser/CMakeFiles/muparser.dir/build.make external/muparser/CMakeFiles/muparser.dir/depend /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/depend /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/external/muparser /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser/CMakeFiles/muparser.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/external/muparser/CMakeFiles/muparser.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/external/muparser/CMakeFiles/muparser.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/external/muparser/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/external/muparser/CMakeFiles/muparser.dir/depend.internal". Scanning dependencies of target muparser make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f external/muparser/CMakeFiles/muparser.dir/build.make external/muparser/CMakeFiles/muparser.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/intfire /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/intfire /builddir/build/BUILD/moose-core-3.1.4/build/intfire/CMakeFiles/intfire.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/intfire/CMakeFiles/intfire.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/intfire/CMakeFiles/intfire.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/intfire/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/intfire/CMakeFiles/intfire.dir/depend.internal". Scanning dependencies of target intfire make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f intfire/CMakeFiles/intfire.dir/build.make intfire/CMakeFiles/intfire.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/msg /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/msg /builddir/build/BUILD/moose-core-3.1.4/build/msg/CMakeFiles/msg.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/msg/CMakeFiles/msg.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/msg/CMakeFiles/msg.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/msg/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/msg/CMakeFiles/msg.dir/depend.internal". Scanning dependencies of target msg make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f msg/CMakeFiles/msg.dir/build.make msg/CMakeFiles/msg.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/basecode /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/basecode /builddir/build/BUILD/moose-core-3.1.4/build/basecode/CMakeFiles/basecode.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/basecode/CMakeFiles/basecode.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/basecode/CMakeFiles/basecode.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/basecode/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/basecode/CMakeFiles/basecode.dir/depend.internal". Scanning dependencies of target basecode make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f basecode/CMakeFiles/basecode.dir/build.make basecode/CMakeFiles/basecode.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/consts.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/consts.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/consts.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParser.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParser.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParser.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object intfire/CMakeFiles/intfire.dir/AdExIF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdExIF.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/AdExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object msg/CMakeFiles/msg.dir/Msg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/Msg.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/msg/Msg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 2%] Building CXX object intfire/CMakeFiles/intfire.dir/AdThreshIF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/AdThreshIF.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/AdThreshIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object basecode/CMakeFiles/basecode.dir/Element.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable 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-specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DataElement.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/DataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 3%] Building CXX object msg/CMakeFiles/msg.dir/DiagonalMsg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/DiagonalMsg.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/msg/DiagonalMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 1%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParserBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParserBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 3%] Building CXX object intfire/CMakeFiles/intfire.dir/ExIF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/ExIF.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/ExIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 4%] Building CXX object basecode/CMakeFiles/basecode.dir/GlobalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/GlobalDataElement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 5%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParserBytecode.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParserBytecode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 7%] Building CXX object basecode/CMakeFiles/basecode.dir/LocalDataElement.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL 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external/muparser/CMakeFiles/muparser.dir/src/muParserCallback.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParserCallback.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParserCallback.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 7%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserDLL.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParserDLL.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParserDLL.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 4%] Building CXX object msg/CMakeFiles/msg.dir/OneToAllMsg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToAllMsg.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/msg/OneToAllMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 7%] Building CXX object basecode/CMakeFiles/basecode.dir/Eref.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Eref.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/Eref.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 6%] Building CXX object intfire/CMakeFiles/intfire.dir/IntFireBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IntFireBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/IntFireBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 9%] Building CXX object msg/CMakeFiles/msg.dir/OneToOneMsg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/OneToOneMsg.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/msg/OneToOneMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 8%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserError.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -Wno-switch -Wno-unknown-pragmas -o CMakeFiles/muparser.dir/src/muParserError.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/external/muparser/src/muParserError.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 9%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserInt.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL 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'/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 9%] Building CXX object basecode/CMakeFiles/basecode.dir/Finfo.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Finfo.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/Finfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 9%] Building CXX object intfire/CMakeFiles/intfire.dir/IzhIF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/IzhIF.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/IzhIF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 9%] Building CXX object msg/CMakeFiles/msg.dir/SingleMsg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/msg/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/msg.dir/SingleMsg.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/msg/SingleMsg.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 11%] Building CXX object basecode/CMakeFiles/basecode.dir/DestFinfo.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/DestFinfo.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/DestFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 11%] Building CXX object intfire/CMakeFiles/intfire.dir/LIF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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basecode/CMakeFiles/basecode.dir/Cinfo.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Cinfo.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/Cinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 12%] Building CXX object intfire/CMakeFiles/intfire.dir/testIntFire.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/intfire && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/intfire/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/intfire.dir/testIntFire.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/intfire/testIntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 10%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserTest.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../msg -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/./include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions 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CMakeFiles/intfire.dir/AdExIF.cpp.o CMakeFiles/intfire.dir/AdThreshIF.cpp.o CMakeFiles/intfire.dir/ExIF.cpp.o CMakeFiles/intfire.dir/IntFireBase.cpp.o CMakeFiles/intfire.dir/IzhIF.cpp.o CMakeFiles/intfire.dir/LIF.cpp.o CMakeFiles/intfire.dir/QIF.cpp.o CMakeFiles/intfire.dir/testIntFire.cpp.o /usr/bin/ranlib libintfire.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 13%] Built target intfire make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 13%] Building CXX object basecode/CMakeFiles/basecode.dir/SrcFinfo.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SrcFinfo.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/SrcFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f shell/CMakeFiles/shell.dir/build.make shell/CMakeFiles/shell.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/shell /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/shell /builddir/build/BUILD/moose-core-3.1.4/build/shell/CMakeFiles/shell.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/shell/CMakeFiles/shell.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/shell/CMakeFiles/shell.dir/depend.internal". 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-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SharedFinfo.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/SharedFinfo.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 13%] Building CXX object external/muparser/CMakeFiles/muparser.dir/src/muParserTokenReader.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/external/muparser && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 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16%] Building CXX object basecode/CMakeFiles/basecode.dir/Id.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/Id.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/Id.cpp make[2]: Leaving directory 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Shell.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/shell/Shell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 16%] Building CXX object msg/CMakeFiles/msg.dir/testMsg.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg 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basecode/CMakeFiles/basecode.dir/global.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/global.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/global.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/basecode/global.cpp: In function 'bool moose::createParentDirs(const string&)': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/basecode/global.cpp:155:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 155 | system( command.c_str() ); BUILDSTDERR: | ~~~~~~^~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 18%] Linking CXX static library libmsg.a cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/cmake -P CMakeFiles/msg.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/msg && /usr/bin/cmake -E cmake_link_script CMakeFiles/msg.dir/link.txt --verbose=1 /usr/bin/ar qc libmsg.a CMakeFiles/msg.dir/Msg.cpp.o CMakeFiles/msg.dir/DiagonalMsg.cpp.o CMakeFiles/msg.dir/OneToAllMsg.cpp.o CMakeFiles/msg.dir/OneToOneMsg.cpp.o 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-Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/SaveModels.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/shell/SaveModels.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 19%] Building CXX object basecode/CMakeFiles/basecode.dir/EpFunc.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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Scanning dependencies of target randnum make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f randnum/CMakeFiles/randnum.dir/build.make randnum/CMakeFiles/randnum.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 20%] Building CXX object basecode/CMakeFiles/basecode.dir/SparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/SparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/SparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/Binomial.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Binomial.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/Binomial.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/scheduling /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/scheduling /builddir/build/BUILD/moose-core-3.1.4/build/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/scheduling/CMakeFiles/scheduling.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/scheduling/CMakeFiles/scheduling.dir/depend.internal". 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Scanning dependencies of target scheduling make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f scheduling/CMakeFiles/scheduling.dir/build.make scheduling/CMakeFiles/scheduling.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 20%] Building CXX object basecode/CMakeFiles/basecode.dir/HopFunc.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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-fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/basecode.dir/doubleEq.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/basecode/doubleEq.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 21%] Building CXX object randnum/CMakeFiles/randnum.dir/BinomialRng.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/BinomialRng.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/BinomialRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Exponential.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 23%] Building CXX object randnum/CMakeFiles/randnum.dir/Gamma.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Gamma.cpp.o -c 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-fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/scheduling.dir/Clock.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/scheduling/Clock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/GammaRng.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/GammaRng.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/GammaRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/Normal.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Normal.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/Normal.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/randnum/Normal.cpp: In static member function 'static double Normal::aliasMethod()': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/randnum/Normal.cpp:311:50: warning: 'uniform_prime' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 311 | v_num = (unsigned long)(d*uniform*uniform*uniform_prime); BUILDSTDERR: | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 24%] Building CXX object scheduling/CMakeFiles/scheduling.dir/testScheduling.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/scheduling && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/scheduling/../msg -I/builddir/build/BUILD/moose-core-3.1.4/scheduling/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables 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Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 25%] Built target scheduling make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 22%] Building CXX object basecode/CMakeFiles/basecode.dir/testAsync.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/basecode/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/biophysics/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/biophysics/CMakeFiles/biophysics.dir/depend.internal". Scanning dependencies of target biophysics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f biophysics/CMakeFiles/biophysics.dir/build.make biophysics/CMakeFiles/biophysics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 25%] Linking CXX static library libbasecode.a cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/cmake -P CMakeFiles/basecode.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/basecode && /usr/bin/cmake -E cmake_link_script CMakeFiles/basecode.dir/link.txt --verbose=1 /usr/bin/ar qc libbasecode.a CMakeFiles/basecode.dir/consts.cpp.o CMakeFiles/basecode.dir/Element.cpp.o CMakeFiles/basecode.dir/DataElement.cpp.o CMakeFiles/basecode.dir/GlobalDataElement.cpp.o CMakeFiles/basecode.dir/LocalDataElement.cpp.o CMakeFiles/basecode.dir/Eref.cpp.o CMakeFiles/basecode.dir/Finfo.cpp.o CMakeFiles/basecode.dir/DestFinfo.cpp.o CMakeFiles/basecode.dir/Cinfo.cpp.o CMakeFiles/basecode.dir/SrcFinfo.cpp.o CMakeFiles/basecode.dir/ValueFinfo.cpp.o CMakeFiles/basecode.dir/SharedFinfo.cpp.o CMakeFiles/basecode.dir/FieldElementFinfo.cpp.o CMakeFiles/basecode.dir/FieldElement.cpp.o CMakeFiles/basecode.dir/Id.cpp.o CMakeFiles/basecode.dir/ObjId.cpp.o CMakeFiles/basecode.dir/global.cpp.o CMakeFiles/basecode.dir/SetGet.cpp.o CMakeFiles/basecode.dir/OpFuncBase.cpp.o CMakeFiles/basecode.dir/EpFunc.cpp.o CMakeFiles/basecode.dir/HopFunc.cpp.o CMakeFiles/basecode.dir/SparseMatrix.cpp.o CMakeFiles/basecode.dir/doubleEq.cpp.o CMakeFiles/basecode.dir/testAsync.cpp.o /usr/bin/ranlib libbasecode.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 25%] Built target basecode make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 24%] Building CXX object randnum/CMakeFiles/randnum.dir/NormalRng.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/NormalRng.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/NormalRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 27%] Building CXX object randnum/CMakeFiles/randnum.dir/Poisson.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Poisson.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/Poisson.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 25%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IntFire.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IntFire.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/IntFire.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 18%] Building CXX object shell/CMakeFiles/shell.dir/LoadModels.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/shell && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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/builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Probability.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/Probability.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 28%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentDataHolder.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 27%] Building CXX object biophysics/CMakeFiles/biophysics.dir/RandSpike.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/RandSpike.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/RandSpike.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 29%] Building CXX object randnum/CMakeFiles/randnum.dir/RandGenerator.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/RandGenerator.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/RandGenerator.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Compartment.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER 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/builddir/build/BUILD/moose-core-3.1.4/biophysics/Compartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 29%] Building CXX object randnum/CMakeFiles/randnum.dir/Uniform.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/Uniform.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/Uniform.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 29%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CompartmentBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/CompartmentBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/CompartmentBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 31%] Building CXX object randnum/CMakeFiles/randnum.dir/UniformRng.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/UniformRng.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/UniformRng.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 32%] Building CXX object randnum/CMakeFiles/randnum.dir/mt19937ar.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/randnum/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/randnum.dir/mt19937ar.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/randnum/mt19937ar.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: In file included from /usr/include/sys/time.h:21, BUILDSTDERR: from /builddir/build/BUILD/moose-core-3.1.4/randnum/mt19937ar.cpp:49: BUILDSTDERR: /usr/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] BUILDSTDERR: 185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" BUILDSTDERR: | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 33%] Linking CXX static library librandnum.a cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/cmake -P CMakeFiles/randnum.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/randnum && /usr/bin/cmake -E cmake_link_script CMakeFiles/randnum.dir/link.txt --verbose=1 /usr/bin/ar qc librandnum.a CMakeFiles/randnum.dir/Binomial.cpp.o CMakeFiles/randnum.dir/BinomialRng.cpp.o CMakeFiles/randnum.dir/Exponential.cpp.o CMakeFiles/randnum.dir/ExponentialRng.cpp.o CMakeFiles/randnum.dir/Gamma.cpp.o CMakeFiles/randnum.dir/GammaRng.cpp.o CMakeFiles/randnum.dir/Normal.cpp.o CMakeFiles/randnum.dir/NormalRng.cpp.o CMakeFiles/randnum.dir/Poisson.cpp.o CMakeFiles/randnum.dir/PoissonRng.cpp.o CMakeFiles/randnum.dir/Probability.cpp.o CMakeFiles/randnum.dir/RandGenerator.cpp.o CMakeFiles/randnum.dir/Uniform.cpp.o CMakeFiles/randnum.dir/UniformRng.cpp.o CMakeFiles/randnum.dir/mt19937ar.cpp.o /usr/bin/ranlib librandnum.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 33%] Built target randnum make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 30%] Building CXX object shell/CMakeFiles/shell.dir/Wildcard.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/shell && /usr/bin/c++ -DENABLE_CPP11 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builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 32%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SymCompartment.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SymCompartment.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/SymCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/builtins /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/builtins /builddir/build/BUILD/moose-core-3.1.4/build/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/builtins/CMakeFiles/moose_builtins.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/builtins/CMakeFiles/moose_builtins.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/builtins/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/builtins/CMakeFiles/moose_builtins.dir/depend.internal". Scanning dependencies of target moose_builtins make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f builtins/CMakeFiles/moose_builtins.dir/build.make builtins/CMakeFiles/moose_builtins.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 27%] Building CXX object shell/CMakeFiles/shell.dir/Neutral.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/shell && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/shell/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/Neutral.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/shell/Neutral.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 34%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Group.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Group.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Group.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 33%] Building CXX object biophysics/CMakeFiles/biophysics.dir/GapJunction.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/GapJunction.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/GapJunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 33%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Arith.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Arith.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Arith.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/utility /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/utility /builddir/build/BUILD/moose-core-3.1.4/build/utility/CMakeFiles/utility.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/utility/CMakeFiles/utility.dir/DependInfo.cmake" is newer than depender 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Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/utility/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/utility/CMakeFiles/utility.dir/depend.internal". Scanning dependencies of target utility make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f utility/CMakeFiles/utility.dir/build.make utility/CMakeFiles/utility.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 35%] Building CXX object utility/CMakeFiles/utility.dir/strutil.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/strutil.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/strutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 35%] Building CXX object utility/CMakeFiles/utility.dir/types.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/types.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/types.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 33%] Building CXX object shell/CMakeFiles/shell.dir/testShell.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/shell && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/shell/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/shell/../msg -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/shell.dir/testShell.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/shell/testShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 36%] Linking CXX static library libshell.a cd /builddir/build/BUILD/moose-core-3.1.4/build/shell && /usr/bin/cmake -P 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/usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/mesh /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/mesh /builddir/build/BUILD/moose-core-3.1.4/build/mesh/CMakeFiles/mesh.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/mesh/CMakeFiles/mesh.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/mesh/CMakeFiles/mesh.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/mesh/CMakeFiles/mesh.dir/depend.internal". Scanning dependencies of target mesh make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f mesh/CMakeFiles/mesh.dir/build.make mesh/CMakeFiles/mesh.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 36%] Building CXX object utility/CMakeFiles/utility.dir/setupenv.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/setupenv.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/setupenv.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 36%] Building CXX object utility/CMakeFiles/utility.dir/numutil.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/numutil.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/numutil.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 36%] Building CXX object utility/CMakeFiles/utility.dir/Annotator.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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/builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/Vec.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/Vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 36%] Building CXX object mesh/CMakeFiles/mesh.dir/ChemCompt.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/ChemCompt.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/ChemCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 37%] Building CXX object utility/CMakeFiles/utility.dir/cnpy.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/utility/../msg -I/builddir/build/BUILD/moose-core-3.1.4/utility/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/utility.dir/cnpy.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/utility/cnpy.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/utility/cnpy.cpp: In function 'bool cnpy2::is_valid_numpy_file(FILE*)': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/utility/cnpy.cpp:88:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] BUILDSTDERR: 88 | fread( buffer, sizeof(char), __pre__size__, fp ); BUILDSTDERR: | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Linking CXX static library libutility.a cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/cmake -P CMakeFiles/utility.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/utility && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility.dir/link.txt --verbose=1 /usr/bin/ar qc libutility.a CMakeFiles/utility.dir/strutil.cpp.o CMakeFiles/utility.dir/types.cpp.o CMakeFiles/utility.dir/setupenv.cpp.o CMakeFiles/utility.dir/numutil.cpp.o CMakeFiles/utility.dir/Annotator.cpp.o CMakeFiles/utility.dir/Vec.cpp.o CMakeFiles/utility.dir/cnpy.cpp.o /usr/bin/ranlib libutility.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Built target utility make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 38%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshCompt.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshCompt.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/MeshCompt.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 34%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Mstring.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 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"/builddir/build/BUILD/moose-core-3.1.4/build/mpi/CMakeFiles/moose_mpi.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/mpi/CMakeFiles/moose_mpi.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/mpi/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/mpi/CMakeFiles/moose_mpi.dir/depend.internal". Scanning dependencies of target moose_mpi make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f mpi/CMakeFiles/moose_mpi.dir/build.make mpi/CMakeFiles/moose_mpi.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Building CXX object mesh/CMakeFiles/mesh.dir/MeshEntry.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/MeshEntry.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/MeshEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/PostMaster.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mpi && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mpi/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/PostMaster.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mpi/PostMaster.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 40%] Building CXX object mpi/CMakeFiles/moose_mpi.dir/testMpi.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mpi && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mpi/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mpi/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_mpi.dir/testMpi.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mpi/testMpi.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 40%] Linking CXX static library libmoose_mpi.a cd /builddir/build/BUILD/moose-core-3.1.4/build/mpi && /usr/bin/cmake -P CMakeFiles/moose_mpi.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/mpi && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_mpi.dir/link.txt --verbose=1 /usr/bin/ar qc libmoose_mpi.a CMakeFiles/moose_mpi.dir/PostMaster.cpp.o CMakeFiles/moose_mpi.dir/testMpi.cpp.o /usr/bin/ranlib libmoose_mpi.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 40%] Built target moose_mpi make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Func.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Func.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Func.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 41%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Function.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Function.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Function.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 42%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/InputVariable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/InputVariable.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/InputVariable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 41%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Variable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Variable.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Variable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 39%] Building CXX object mesh/CMakeFiles/mesh.dir/CubeMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CubeMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/CubeMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 43%] Building CXX object mesh/CMakeFiles/mesh.dir/CylBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/CylBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 43%] Building CXX object mesh/CMakeFiles/mesh.dir/CylMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/CylMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/CylMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 42%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TableBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TableBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/TableBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 44%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroNode.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroNode.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/NeuroNode.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 43%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Table.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Table.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Table.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 45%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineEntry.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineEntry.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/SpineEntry.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Interpol.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 45%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StimulusTable.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/StimulusTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 46%] Building CXX object mesh/CMakeFiles/mesh.dir/SpineMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/SpineMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/SpineMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 44%] Building CXX object mesh/CMakeFiles/mesh.dir/NeuroMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/NeuroMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/NeuroMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 47%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/StreamerBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/StreamerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 46%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/TimeTable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/TimeTable.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/TimeTable.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 48%] Building CXX object mesh/CMakeFiles/mesh.dir/testMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/testMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/testMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 47%] Building CXX object mesh/CMakeFiles/mesh.dir/PsdMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../msg -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/mesh/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/mesh.dir/PsdMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/mesh/PsdMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 49%] Linking CXX static library libmesh.a cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/cmake -P CMakeFiles/mesh.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/mesh && /usr/bin/cmake -E cmake_link_script CMakeFiles/mesh.dir/link.txt --verbose=1 /usr/bin/ar qc libmesh.a CMakeFiles/mesh.dir/ChemCompt.cpp.o CMakeFiles/mesh.dir/MeshCompt.cpp.o CMakeFiles/mesh.dir/MeshEntry.cpp.o CMakeFiles/mesh.dir/CubeMesh.cpp.o CMakeFiles/mesh.dir/CylBase.cpp.o CMakeFiles/mesh.dir/CylMesh.cpp.o CMakeFiles/mesh.dir/NeuroNode.cpp.o CMakeFiles/mesh.dir/NeuroMesh.cpp.o CMakeFiles/mesh.dir/SpineEntry.cpp.o CMakeFiles/mesh.dir/SpineMesh.cpp.o CMakeFiles/mesh.dir/PsdMesh.cpp.o CMakeFiles/mesh.dir/testMesh.cpp.o /usr/bin/ranlib libmesh.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 49%] Built target mesh make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 34%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/ChanBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/signeur /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/signeur /builddir/build/BUILD/moose-core-3.1.4/build/signeur/CMakeFiles/signeur.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/signeur/CMakeFiles/signeur.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/signeur/CMakeFiles/signeur.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/signeur/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/signeur/CMakeFiles/signeur.dir/depend.internal". Scanning dependencies of target signeur make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f signeur/CMakeFiles/signeur.dir/build.make signeur/CMakeFiles/signeur.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 50%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ChanCommon.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ChanCommon.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/ChanCommon.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 48%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Streamer.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Streamer.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Streamer.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 49%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Stats.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Stats.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Stats.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 51%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/HHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 51%] Building CXX object signeur/CMakeFiles/signeur.dir/Adaptor.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/signeur && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../utility -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/Adaptor.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/signeur/Adaptor.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Building CXX object signeur/CMakeFiles/signeur.dir/testSigNeur.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/signeur && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../utility -I/builddir/build/BUILD/moose-core-3.1.4/signeur/../kinetics -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/signeur.dir/testSigNeur.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/signeur/testSigNeur.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Linking CXX static library libsigneur.a cd /builddir/build/BUILD/moose-core-3.1.4/build/signeur && /usr/bin/cmake -P CMakeFiles/signeur.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/signeur && /usr/bin/cmake -E cmake_link_script CMakeFiles/signeur.dir/link.txt --verbose=1 /usr/bin/ar qc libsigneur.a CMakeFiles/signeur.dir/Adaptor.cpp.o CMakeFiles/signeur.dir/testSigNeur.cpp.o /usr/bin/ranlib libsigneur.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Built target signeur make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/ksolve /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/ksolve /builddir/build/BUILD/moose-core-3.1.4/build/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/ksolve/CMakeFiles/ksolve.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/ksolve/CMakeFiles/ksolve.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/ksolve/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/ksolve/CMakeFiles/ksolve.dir/depend.internal". Scanning dependencies of target ksolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f ksolve/CMakeFiles/ksolve.dir/build.make ksolve/CMakeFiles/ksolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Building CXX object ksolve/CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/KinSparseMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePool.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePool.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombiePool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannelBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannelBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/HHChannelBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieFunction.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombieFunction.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/Interpol2D.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/Interpol2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 53%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombieBufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieReac.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieReac.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombieReac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 53%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHChannel2D.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHChannel2D.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/HHChannel2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 52%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/HDF5WriterBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/HDF5WriterBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/builtins/HDF5WriterBase.cpp: In function 'hid_t require_group(hid_t, std::string)': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/builtins/HDF5WriterBase.cpp:87:24: warning: 'current' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 87 | hid_t prev = file, current; BUILDSTDERR: | ^~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 55%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieEnz.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombieEnz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 56%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombieMMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER 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-I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/HHGate2D.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/HHGate2D.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 55%] Building CXX object biophysics/CMakeFiles/biophysics.dir/HHGate.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE 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Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/hsolve/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/hsolve/CMakeFiles/hsolve.dir/depend.internal". Scanning dependencies of target hsolve make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f hsolve/CMakeFiles/hsolve.dir/build.make hsolve/CMakeFiles/hsolve.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 58%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveStruct.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveStruct.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolveStruct.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 57%] Building CXX object biophysics/CMakeFiles/biophysics.dir/CaConcBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode 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-I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HinesMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 59%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MgBlock.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 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CMakeFiles/biophysics.dir/MgBlock.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/MgBlock.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolvePassive.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolvePassive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/RateLookup.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/RateLookup.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/RateLookup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 60%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActive.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActive.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolveActive.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 60%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Nernst.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Nernst.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/Nernst.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 61%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolveActiveSetup.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 62%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveInterface.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolveInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 62%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Neuron.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Neuron.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/Neuron.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 63%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp: In member function 'void HSolve::zombify(Eref) const': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp:218:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 218 | for ( i = compartmentId_.begin(); i != compartmentId_.end(); ++i ) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp:222:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 222 | temp.clear(); BUILDSTDERR: | ^~~~ BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp:226:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 226 | for ( i = caConcId_.begin(); i != caConcId_.end(); ++i ) BUILDSTDERR: | ^~~ BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolve.cpp:229:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' BUILDSTDERR: 229 | temp.clear(); BUILDSTDERR: | ^~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 63%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadCell.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadCell.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/ReadCell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 64%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SwcSegment.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SwcSegment.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/SwcSegment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 63%] Building CXX object hsolve/CMakeFiles/hsolve.dir/HSolveUtils.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/HSolveUtils.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 64%] Building CXX object hsolve/CMakeFiles/hsolve.dir/testHSolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/testHSolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/testHSolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 65%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/ZombieCompartment.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 64%] Building CXX object biophysics/CMakeFiles/biophysics.dir/ReadSwc.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/ReadSwc.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/ReadSwc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 65%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 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/builddir/build/BUILD/moose-core-3.1.4/hsolve/ZombieCaConc.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 66%] Building CXX object hsolve/CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/hsolve/../external/debug -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/hsolve/ZombieHHChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 65%] Building CXX object biophysics/CMakeFiles/biophysics.dir/SynChan.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/SynChan.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/SynChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 66%] Linking CXX static library libhsolve.a cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/cmake -P CMakeFiles/hsolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/hsolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/hsolve.dir/link.txt --verbose=1 /usr/bin/ar qc libhsolve.a CMakeFiles/hsolve.dir/HSolveStruct.cpp.o CMakeFiles/hsolve.dir/HinesMatrix.cpp.o CMakeFiles/hsolve.dir/HSolvePassive.cpp.o CMakeFiles/hsolve.dir/RateLookup.cpp.o CMakeFiles/hsolve.dir/HSolveActive.cpp.o CMakeFiles/hsolve.dir/HSolveActiveSetup.cpp.o CMakeFiles/hsolve.dir/HSolveInterface.cpp.o CMakeFiles/hsolve.dir/HSolve.cpp.o CMakeFiles/hsolve.dir/HSolveUtils.cpp.o CMakeFiles/hsolve.dir/testHSolve.cpp.o CMakeFiles/hsolve.dir/ZombieCompartment.cpp.o CMakeFiles/hsolve.dir/ZombieCaConc.cpp.o CMakeFiles/hsolve.dir/ZombieHHChannel.cpp.o /usr/bin/ranlib libhsolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 67%] Built target hsolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 54%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/NSDFWriter.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/NSDFWriter.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 57%] Building CXX object ksolve/CMakeFiles/ksolve.dir/VoxelPools.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins 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Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 67%] Building CXX object biophysics/CMakeFiles/biophysics.dir/testBiophysics.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 69%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/SpikeStats.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing 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Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/diffusion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/diffusion/CMakeFiles/diffusion.dir/depend.internal". Scanning dependencies of target diffusion make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f diffusion/CMakeFiles/diffusion.dir/build.make diffusion/CMakeFiles/diffusion.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/RateTerm.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/RateTerm.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/RateTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 67%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/HDF5DataWriter.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ 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make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 69%] Building CXX object ksolve/CMakeFiles/ksolve.dir/FuncTerm.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/FuncTerm.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/FuncTerm.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 69%] Building CXX object diffusion/CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/diffusion && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../utility -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/diffusion/FastMatrixElim.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 70%] Building CXX object diffusion/CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o cd 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/builddir/build/BUILD/moose-core-3.1.4/diffusion/DiffPoolVec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 69%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testBuiltins.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/testBuiltins.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 71%] Building CXX object builtins/CMakeFiles/moose_builtins.dir/testNSDF.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/external/muparser/include -I/builddir/build/BUILD/moose-core-3.1.4/scheduling -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/moose_builtins.dir/testNSDF.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/builtins/testNSDF.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 72%] Linking CXX static library libmoose_builtins.a cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/cmake -P CMakeFiles/moose_builtins.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/builtins && /usr/bin/cmake -E cmake_link_script CMakeFiles/moose_builtins.dir/link.txt --verbose=1 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CMakeFiles/moose_builtins.dir/testNSDF.cpp.o /usr/bin/ranlib libmoose_builtins.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 72%] Built target moose_builtins make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/device /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/device /builddir/build/BUILD/moose-core-3.1.4/build/device/CMakeFiles/device.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/device/CMakeFiles/device.dir/DependInfo.cmake" is newer 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Scanning dependencies of target device make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f device/CMakeFiles/device.dir/build.make device/CMakeFiles/device.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 72%] Building CXX object device/CMakeFiles/device.dir/PulseGen.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/device/../msg -I/builddir/build/BUILD/moose-core-3.1.4/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PulseGen.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/device/PulseGen.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 70%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Stoich.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Stoich.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/Stoich.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 72%] Building CXX object device/CMakeFiles/device.dir/DiffAmp.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/device/../msg -I/builddir/build/BUILD/moose-core-3.1.4/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/DiffAmp.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/device/DiffAmp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 73%] Building CXX object device/CMakeFiles/device.dir/PIDController.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/device/../msg -I/builddir/build/BUILD/moose-core-3.1.4/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/PIDController.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/device/PIDController.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 73%] Building CXX object device/CMakeFiles/device.dir/RC.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/device/../msg -I/builddir/build/BUILD/moose-core-3.1.4/device/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/device.dir/RC.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/device/RC.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 74%] Linking CXX static library libdevice.a cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/cmake -P CMakeFiles/device.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/device && /usr/bin/cmake -E cmake_link_script CMakeFiles/device.dir/link.txt --verbose=1 /usr/bin/ar qc libdevice.a CMakeFiles/device.dir/PulseGen.cpp.o CMakeFiles/device.dir/DiffAmp.cpp.o CMakeFiles/device.dir/PIDController.cpp.o CMakeFiles/device.dir/RC.cpp.o /usr/bin/ranlib libdevice.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 74%] Built target device make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 72%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Ksolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Ksolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/Ksolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/benchmarks /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/benchmarks/CMakeFiles/benchmarks.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/benchmarks/CMakeFiles/benchmarks.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/benchmarks/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/benchmarks/CMakeFiles/benchmarks.dir/depend.internal". Scanning dependencies of target benchmarks make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f benchmarks/CMakeFiles/benchmarks.dir/build.make benchmarks/CMakeFiles/benchmarks.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 75%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/benchmarks.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/benchmarks/../msg -I/builddir/build/BUILD/moose-core-3.1.4/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/benchmarks.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/benchmarks/benchmarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 76%] Building CXX object benchmarks/CMakeFiles/benchmarks.dir/kineticMarks.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/benchmarks/../msg -I/builddir/build/BUILD/moose-core-3.1.4/benchmarks/../basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/benchmarks/kineticMarks.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 76%] Linking CXX static library libbenchmarks.a cd /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks && /usr/bin/cmake -P CMakeFiles/benchmarks.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/benchmarks && /usr/bin/cmake -E cmake_link_script CMakeFiles/benchmarks.dir/link.txt --verbose=1 /usr/bin/ar qc libbenchmarks.a CMakeFiles/benchmarks.dir/benchmarks.cpp.o CMakeFiles/benchmarks.dir/kineticMarks.cpp.o /usr/bin/ranlib libbenchmarks.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 76%] Built target benchmarks make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 71%] Building CXX object diffusion/CMakeFiles/diffusion.dir/Dsolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/diffusion && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../utility -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/Dsolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/diffusion/Dsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 67%] Building CXX object biophysics/CMakeFiles/biophysics.dir/NMDAChan.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/NMDAChan.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/NMDAChan.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/kinetics /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/kinetics /builddir/build/BUILD/moose-core-3.1.4/build/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/kinetics/CMakeFiles/kinetics.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/kinetics/CMakeFiles/kinetics.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/kinetics/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/kinetics/CMakeFiles/kinetics.dir/depend.internal". Scanning dependencies of target kinetics make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f kinetics/CMakeFiles/kinetics.dir/build.make kinetics/CMakeFiles/kinetics.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 77%] Building CXX object biophysics/CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/IzhikevichNrn.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/IzhikevichNrn.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 78%] Building CXX object kinetics/CMakeFiles/kinetics.dir/PoolBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/PoolBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/PoolBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 78%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Pool.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Pool.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/Pool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 76%] Building CXX object diffusion/CMakeFiles/diffusion.dir/testDiffusion.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/diffusion && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../utility -I/builddir/build/BUILD/moose-core-3.1.4/diffusion/../ksolve -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/diffusion.dir/testDiffusion.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/diffusion/testDiffusion.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Linking CXX static library libdiffusion.a cd /builddir/build/BUILD/moose-core-3.1.4/build/diffusion && /usr/bin/cmake -P CMakeFiles/diffusion.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/diffusion && /usr/bin/cmake -E cmake_link_script CMakeFiles/diffusion.dir/link.txt --verbose=1 /usr/bin/ar qc libdiffusion.a CMakeFiles/diffusion.dir/FastMatrixElim.cpp.o CMakeFiles/diffusion.dir/DiffPoolVec.cpp.o CMakeFiles/diffusion.dir/Dsolve.cpp.o CMakeFiles/diffusion.dir/testDiffusion.cpp.o /usr/bin/ranlib libdiffusion.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Built target diffusion make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Building CXX object kinetics/CMakeFiles/kinetics.dir/BufPool.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/BufPool.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/BufPool.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 75%] Building CXX object ksolve/CMakeFiles/ksolve.dir/Gsolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/Gsolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/Gsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 78%] Building CXX object biophysics/CMakeFiles/biophysics.dir/DifShell.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/DifShell.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/DifShell.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Leakage.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Leakage.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/Leakage.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Building CXX object ksolve/CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/ZombiePoolInterface.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReacBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReacBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/ReacBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 81%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Reac.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Reac.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/Reac.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 79%] Building CXX object ksolve/CMakeFiles/ksolve.dir/testKsolve.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/testKsolve.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/testKsolve.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 80%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VectorTable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ 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-specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/EnzBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/EnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 82%] Building CXX object kinetics/CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/CplxEnzBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 83%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Enz.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 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'/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/synapse /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/synapse /builddir/build/BUILD/moose-core-3.1.4/build/synapse/CMakeFiles/synapse.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/synapse/CMakeFiles/synapse.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/synapse/CMakeFiles/synapse.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/synapse/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/synapse/CMakeFiles/synapse.dir/depend.internal". Scanning dependencies of target synapse make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f synapse/CMakeFiles/synapse.dir/build.make synapse/CMakeFiles/synapse.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 81%] Building CXX object ksolve/CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../builtins -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../utility -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/.. -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../mesh -I/builddir/build/BUILD/moose-core-3.1.4/ksolve/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/ksolve/SteadyStateGsl.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 84%] Linking CXX static library libksolve.a cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/cmake -P CMakeFiles/ksolve.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/ksolve && /usr/bin/cmake -E cmake_link_script CMakeFiles/ksolve.dir/link.txt --verbose=1 /usr/bin/ar qc libksolve.a CMakeFiles/ksolve.dir/KinSparseMatrix.cpp.o CMakeFiles/ksolve.dir/ZombiePool.cpp.o CMakeFiles/ksolve.dir/ZombieFunction.cpp.o CMakeFiles/ksolve.dir/ZombieBufPool.cpp.o CMakeFiles/ksolve.dir/ZombieReac.cpp.o CMakeFiles/ksolve.dir/ZombieEnz.cpp.o CMakeFiles/ksolve.dir/ZombieMMenz.cpp.o CMakeFiles/ksolve.dir/VoxelPoolsBase.cpp.o CMakeFiles/ksolve.dir/VoxelPools.cpp.o CMakeFiles/ksolve.dir/GssaVoxelPools.cpp.o CMakeFiles/ksolve.dir/RateTerm.cpp.o CMakeFiles/ksolve.dir/FuncTerm.cpp.o CMakeFiles/ksolve.dir/Stoich.cpp.o CMakeFiles/ksolve.dir/Ksolve.cpp.o CMakeFiles/ksolve.dir/Gsolve.cpp.o CMakeFiles/ksolve.dir/ZombiePoolInterface.cpp.o CMakeFiles/ksolve.dir/testKsolve.cpp.o CMakeFiles/ksolve.dir/SteadyStateGsl.cpp.o /usr/bin/ranlib libksolve.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 84%] Built target ksolve make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 84%] Building CXX object synapse/CMakeFiles/synapse.dir/RollingMatrix.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/RollingMatrix.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/RollingMatrix.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 82%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovRateTable.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 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Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 84%] Building CXX object synapse/CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/GraupnerBrunel2012CaPlasticitySynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 86%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MatrixOps.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MatrixOps.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/MatrixOps.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 85%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 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-Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/MMenz.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/MMenz.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/STDPSynapse.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/STDPSynapse.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/STDPSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 84%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovChannel.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovChannel.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovChannel.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 86%] Building CXX object kinetics/CMakeFiles/kinetics.dir/Species.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/Species.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/Species.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 86%] Building CXX object synapse/CMakeFiles/synapse.dir/SeqSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 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/builddir/build/BUILD/moose-core-3.1.4/synapse/SeqSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 86%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolverBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovSolverBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 88%] Building CXX object synapse/CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/SimpleSynHandler.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 89%] Building CXX object biophysics/CMakeFiles/biophysics.dir/MarkovSolver.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/MarkovSolver.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovSolver.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovSolver.cpp: In member function 'Matrix* MarkovSolver::computePadeApproximant(Matrix*, unsigned int)': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovSolver.cpp:84:14: warning: 'V' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 84 | Matrix *U, *V, *VplusU, *VminusU, *invVminusU, *Qpower; BUILDSTDERR: | ^ BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/biophysics/MarkovSolver.cpp:88:10: warning: 'padeCoeffs' may be used uninitialized in this function [-Wmaybe-uninitialized] BUILDSTDERR: 88 | double *padeCoeffs; BUILDSTDERR: | ^~~~~~~~~~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/WriteKkit.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/WriteKkit.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/WriteKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/kinetics/WriteKkit.cpp: In function 'void writePlot(std::ofstream&, Id, std::string, std::string, double, double)': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/kinetics/WriteKkit.cpp:281:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] BUILDSTDERR: 281 | if ( pos == string::npos ) BUILDSTDERR: | ^~ BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/kinetics/WriteKkit.cpp:283:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' BUILDSTDERR: 283 | if ( pos == string::npos ) BUILDSTDERR: | ^~ make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 87%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadKkit.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadKkit.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/ReadKkit.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 89%] Building CXX object synapse/CMakeFiles/synapse.dir/SynHandlerBase.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/SynHandlerBase.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 89%] Building CXX object biophysics/CMakeFiles/biophysics.dir/Spine.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/Spine.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/Spine.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/testSynapse.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/testSynapse.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/testSynapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 89%] Building CXX object biophysics/CMakeFiles/biophysics.dir/VClamp.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/biophysics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../synapse -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../utility -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/.. -I/builddir/build/BUILD/moose-core-3.1.4/biophysics/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/biophysics.dir/VClamp.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/biophysics/VClamp.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 92%] Building CXX object kinetics/CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/lookupVolumeFromMesh.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 90%] Building CXX object kinetics/CMakeFiles/kinetics.dir/ReadCspace.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/ReadCspace.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/ReadCspace.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 91%] Building CXX object synapse/CMakeFiles/synapse.dir/Synapse.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../utility -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../kinetics -I/builddir/build/BUILD/moose-core-3.1.4/synapse/../external/muparser/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/synapse.dir/Synapse.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/synapse/Synapse.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 92%] Linking CXX static library libsynapse.a cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/cmake -P CMakeFiles/synapse.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/synapse && /usr/bin/cmake -E cmake_link_script CMakeFiles/synapse.dir/link.txt --verbose=1 /usr/bin/ar qc libsynapse.a CMakeFiles/synapse.dir/GraupnerBrunel2012CaPlasticitySynHandler.cpp.o CMakeFiles/synapse.dir/RollingMatrix.cpp.o CMakeFiles/synapse.dir/STDPSynHandler.cpp.o CMakeFiles/synapse.dir/STDPSynapse.cpp.o CMakeFiles/synapse.dir/SeqSynHandler.cpp.o CMakeFiles/synapse.dir/SimpleSynHandler.cpp.o CMakeFiles/synapse.dir/SynHandlerBase.cpp.o CMakeFiles/synapse.dir/Synapse.cpp.o CMakeFiles/synapse.dir/testSynapse.cpp.o /usr/bin/ranlib libsynapse.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 92%] Built target synapse make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 92%] Building CXX object kinetics/CMakeFiles/kinetics.dir/testKinetics.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../msg -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/kinetics/../utility -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -o CMakeFiles/kinetics.dir/testKinetics.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/kinetics/testKinetics.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 93%] Linking CXX static library libkinetics.a cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/cmake -P CMakeFiles/kinetics.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/moose-core-3.1.4/build/kinetics && /usr/bin/cmake -E cmake_link_script CMakeFiles/kinetics.dir/link.txt --verbose=1 /usr/bin/ar qc libkinetics.a CMakeFiles/kinetics.dir/PoolBase.cpp.o CMakeFiles/kinetics.dir/Pool.cpp.o CMakeFiles/kinetics.dir/BufPool.cpp.o CMakeFiles/kinetics.dir/ReacBase.cpp.o CMakeFiles/kinetics.dir/Reac.cpp.o CMakeFiles/kinetics.dir/EnzBase.cpp.o CMakeFiles/kinetics.dir/CplxEnzBase.cpp.o CMakeFiles/kinetics.dir/Enz.cpp.o CMakeFiles/kinetics.dir/MMenz.cpp.o CMakeFiles/kinetics.dir/Species.cpp.o CMakeFiles/kinetics.dir/ReadKkit.cpp.o CMakeFiles/kinetics.dir/WriteKkit.cpp.o CMakeFiles/kinetics.dir/ReadCspace.cpp.o CMakeFiles/kinetics.dir/lookupVolumeFromMesh.cpp.o CMakeFiles/kinetics.dir/testKinetics.cpp.o /usr/bin/ranlib libkinetics.a make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 93%] Built target kinetics make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 92%] 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Scanning dependencies of target moose.bin make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f CMakeFiles/moose.bin.dir/build.make CMakeFiles/moose.bin.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 95%] Building CXX object CMakeFiles/moose.bin.dir/basecode/main.cpp.o /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing 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-I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../msg -I/usr/lib64/python3.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -I/usr/include/python3.7m -I/usr/include/python3.7m -o CMakeFiles/_moose.dir/mfield.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/pymoose/mfield.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 97%] Building CXX object pymoose/CMakeFiles/_moose.dir/test_moosemodule.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../msg -I/usr/lib64/python3.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -I/usr/include/python3.7m -I/usr/include/python3.7m -o CMakeFiles/_moose.dir/test_moosemodule.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/pymoose/test_moosemodule.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 94%] Building CXX object pymoose/CMakeFiles/_moose.dir/vec.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../msg -I/usr/lib64/python3.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -I/usr/include/python3.7m -I/usr/include/python3.7m -o CMakeFiles/_moose.dir/vec.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/pymoose/vec.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 97%] Building CXX object pymoose/CMakeFiles/_moose.dir/PyRun.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../msg -I/usr/lib64/python3.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -I/usr/include/python3.7m -I/usr/include/python3.7m -o CMakeFiles/_moose.dir/PyRun.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/pymoose/PyRun.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 96%] Building CXX object pymoose/CMakeFiles/_moose.dir/melement.cpp.o cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/c++ -DENABLE_CPP11 -DMOOSE_VERSION=\"3.1.4\" -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -DPYMOOSE -DQUIET_MODE -DUSE_GENESIS_PARSER -DUSE_GSL -DUSE_HDF5 -DUSE_NUMPY -D_moose_EXPORTS -I/builddir/build/BUILD/moose-core-3.1.4 -I/builddir/build/BUILD/moose-core-3.1.4/msg -I/builddir/build/BUILD/moose-core-3.1.4/basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../basecode -I/builddir/build/BUILD/moose-core-3.1.4/pymoose/../msg -I/usr/lib64/python3.7/site-packages/numpy/core/include -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -fPIC -Wall -Wno-unused-variable -Wno-unused-function -fPIC -Wno-strict-aliasing -Wno-unused-but-set-variable -UDO_UNIT_TESTS -O3 -I/usr/include/python3.7m -I/usr/include/python3.7m -o CMakeFiles/_moose.dir/melement.cpp.o -c /builddir/build/BUILD/moose-core-3.1.4/pymoose/melement.cpp make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 98%] Linking CXX shared module ../../python/moose/_moose.so cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/cmake -E cmake_link_script CMakeFiles/_moose.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -std=c++11 -DNDEBUG -Wl,--build-id -shared -o ../../python/moose/_moose.so CMakeFiles/_moose.dir/moosemodule.cpp.o CMakeFiles/_moose.dir/vec.cpp.o CMakeFiles/_moose.dir/mfield.cpp.o CMakeFiles/_moose.dir/pymooseinit.cpp.o CMakeFiles/_moose.dir/melement.cpp.o CMakeFiles/_moose.dir/test_moosemodule.cpp.o CMakeFiles/_moose.dir/PyRun.cpp.o -L/builddir/build/BUILD/moose-core-3.1.4/build -Wl,--whole-archive ../external/muparser/libmuparser.a ../builtins/libmoose_builtins.a ../msg/libmsg.a ../benchmarks/libbenchmarks.a ../shell/libshell.a ../randnum/librandnum.a ../scheduling/libscheduling.a ../mpi/libmoose_mpi.a ../biophysics/libbiophysics.a ../utility/libutility.a ../kinetics/libkinetics.a ../synapse/libsynapse.a ../intfire/libintfire.a ../hsolve/libhsolve.a ../mesh/libmesh.a ../signeur/libsigneur.a ../diffusion/libdiffusion.a ../ksolve/libksolve.a ../device/libdevice.a ../basecode/libbasecode.a -Wl,--no-whole-archive -lhdf5_cpp -lhdf5 -lsz -lz -ldl -lm -lhdf5_hl_cpp -lhdf5_hl -lgsl -lgslcblas cd /builddir/build/BUILD/moose-core-3.1.4/build/pymoose && /usr/bin/cmake -E cmake_echo_color --cyan "MOOSE python extention is successfully built. Now " " Run 'sudo make install' to install it. " " " "NOTE: Run 'pip uninstall moose' to uninstall moose." MOOSE python extention is successfully built. Now Run 'sudo make install' to install it. NOTE: Run 'pip uninstall moose' to uninstall moose. make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' BUILDSTDERR: /usr/bin/ld: ../builtins/libmoose_builtins.a(testNSDF.cpp.o): in function `testCreateStringDataset()': BUILDSTDERR: /builddir/build/BUILD/moose-core-3.1.4/builtins/testNSDF.cpp:76: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 98%] Built target _moose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f CMakeFiles/copy_pymoose.dir/build.make CMakeFiles/copy_pymoose.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/copy_pymoose.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/copy_pymoose.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/copy_pymoose.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/copy_pymoose.dir/depend.internal". Scanning dependencies of target copy_pymoose make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f CMakeFiles/copy_pymoose.dir/build.make CMakeFiles/copy_pymoose.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 99%] Copying required python files from /builddir/build/BUILD/moose-core-3.1.4/python to to build directory /usr/bin/cmake -E copy_directory /builddir/build/BUILD/moose-core-3.1.4/python /builddir/build/BUILD/moose-core-3.1.4/build/python make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [ 99%] Built target copy_pymoose make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f CMakeFiles/bdist.dir/build.make CMakeFiles/bdist.dir/depend make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' cd /builddir/build/BUILD/moose-core-3.1.4/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4 /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build /builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/bdist.dir/DependInfo.cmake --color= Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/bdist.dir/DependInfo.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/bdist.dir/depend.internal". Dependee "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles/bdist.dir/depend.internal". Scanning dependencies of target bdist make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/make -f CMakeFiles/bdist.dir/build.make CMakeFiles/bdist.dir/build make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [100%] bdist is saved to /builddir/build/BUILD/moose-core-3.1.4/build/bdist cd /builddir/build/BUILD/moose-core-3.1.4/build/python && /usr/bin/python3 setup.cmake.py bdist_dumb -p CMAKE -d /builddir/build/BUILD/moose-core-3.1.4/build/bdist Got 3.1.4 from VERSION file [INFO] Suffix is so running bdist_dumb running build running build_py creating build creating build/lib creating build/lib/rdesigneur copying rdesigneur/rdesigneur.py -> build/lib/rdesigneur copying rdesigneur/rmoogli.py -> build/lib/rdesigneur copying rdesigneur/__init__.py -> build/lib/rdesigneur copying rdesigneur/rdesigneurProtos.py -> build/lib/rdesigneur creating build/lib/moose copying moose/optimizer_interface.py -> build/lib/moose copying moose/alternate.py -> build/lib/moose copying moose/methods_utils.py -> build/lib/moose copying moose/moose_constants.py -> build/lib/moose copying moose/graphutil.py -> build/lib/moose copying moose/__init__.py -> build/lib/moose copying moose/moose_test.py -> build/lib/moose copying moose/moose_config.py -> build/lib/moose copying moose/merge.py -> build/lib/moose copying moose/plot_utils.py -> build/lib/moose copying moose/recording.py -> build/lib/moose copying moose/print_utils.py -> build/lib/moose copying moose/utils.py -> build/lib/moose copying moose/graph_utils.py -> build/lib/moose copying moose/moose.py -> build/lib/moose copying moose/constants.py -> build/lib/moose copying moose/hdfutil.py -> build/lib/moose creating build/lib/moose/SBML copying moose/SBML/writeSBML.py -> build/lib/moose/SBML copying moose/SBML/validation.py -> build/lib/moose/SBML copying moose/SBML/__init__.py -> build/lib/moose/SBML copying moose/SBML/readSBML.py -> build/lib/moose/SBML creating build/lib/moose/genesis copying moose/genesis/writeKkit.py -> build/lib/moose/genesis copying moose/genesis/__init__.py -> build/lib/moose/genesis creating build/lib/moose/neuroml copying moose/neuroml/ChannelML.py -> build/lib/moose/neuroml copying moose/neuroml/__init__.py -> build/lib/moose/neuroml copying moose/neuroml/NeuroML.py -> build/lib/moose/neuroml copying moose/neuroml/utils.py -> build/lib/moose/neuroml copying moose/neuroml/NetworkML.py -> build/lib/moose/neuroml copying moose/neuroml/MorphML.py -> build/lib/moose/neuroml creating build/lib/moose/neuroml2 copying moose/neuroml2/test_converter.py -> build/lib/moose/neuroml2 copying moose/neuroml2/converter.py -> build/lib/moose/neuroml2 copying moose/neuroml2/test_reader.py -> build/lib/moose/neuroml2 copying moose/neuroml2/generated_neuroml.py -> build/lib/moose/neuroml2 copying moose/neuroml2/test_hhfit.py -> build/lib/moose/neuroml2 copying moose/neuroml2/__init__.py -> build/lib/moose/neuroml2 copying moose/neuroml2/hhfit.py -> build/lib/moose/neuroml2 copying moose/neuroml2/generated_neuromlsub.py -> build/lib/moose/neuroml2 copying moose/neuroml2/units.py -> build/lib/moose/neuroml2 copying moose/neuroml2/reader.py -> build/lib/moose/neuroml2 creating build/lib/moose/chemUtil copying moose/chemUtil/add_Delete_ChemicalSolver.py -> build/lib/moose/chemUtil copying moose/chemUtil/__init__.py -> build/lib/moose/chemUtil copying moose/chemUtil/chemConnectUtil.py -> build/lib/moose/chemUtil copying moose/chemUtil/graphUtils.py -> build/lib/moose/chemUtil copying moose/_moose.so -> build/lib/moose installing to build/bdist.linux-riscv64/dumb running install running install_lib creating build/bdist.linux-riscv64 creating build/bdist.linux-riscv64/dumb creating build/bdist.linux-riscv64/dumb/usr creating build/bdist.linux-riscv64/dumb/usr/lib creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7 creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/optimizer_interface.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/alternate.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/_moose.so -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/methods_utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/moose_constants.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/graphutil.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_converter.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/converter.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_reader.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/generated_neuroml.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_hhfit.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/hhfit.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/generated_neuromlsub.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/units.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/reader.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2 creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml copying build/lib/moose/moose_test.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/writeSBML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/validation.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/readSBML.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML copying build/lib/moose/moose_config.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/merge.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/genesis copying build/lib/moose/genesis/writeKkit.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/genesis copying build/lib/moose/plot_utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/recording.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/print_utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/graph_utils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/moose.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/constants.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose copying build/lib/moose/hdfutil.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/add_Delete_ChemicalSolver.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/chemConnectUtil.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/graphUtils.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil creating build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/optimizer_interface.py to optimizer_interface.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/alternate.py to alternate.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/methods_utils.py to methods_utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/moose_constants.py to moose_constants.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/graphutil.py to graphutil.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/test_converter.py to test_converter.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/converter.py to converter.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/test_reader.py to test_reader.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/generated_neuroml.py to generated_neuroml.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/test_hhfit.py to test_hhfit.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/hhfit.py to hhfit.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/generated_neuromlsub.py to generated_neuromlsub.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/units.py to units.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml2/reader.py to reader.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/ChannelML.py to ChannelML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/NeuroML.py to NeuroML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/NetworkML.py to NetworkML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/neuroml/MorphML.py to MorphML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/moose_test.py to moose_test.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML/writeSBML.py to writeSBML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML/validation.py to validation.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/SBML/readSBML.py to readSBML.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/moose_config.py to moose_config.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/merge.py to merge.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/genesis/writeKkit.py to writeKkit.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/genesis/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/plot_utils.py to plot_utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/recording.py to recording.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/print_utils.py to print_utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/utils.py to utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/graph_utils.py to graph_utils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/moose.py to moose.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/constants.py to constants.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/hdfutil.py to hdfutil.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil/add_Delete_ChemicalSolver.py to add_Delete_ChemicalSolver.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil/chemConnectUtil.py to chemConnectUtil.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/moose/chemUtil/graphUtils.py to graphUtils.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur/rdesigneur.py to rdesigneur.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur/rmoogli.py to rmoogli.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur/__init__.py to __init__.cpython-37.pyc byte-compiling build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.cpython-37.pyc running install_egg_info Writing build/bdist.linux-riscv64/dumb/usr/lib/python3.7/site-packages/pymoose-3.1.4-py3.7.egg-info creating /builddir/build/BUILD/moose-core-3.1.4/build/bdist Creating tar archive removing 'build/bdist.linux-riscv64/dumb' (and everything under it) make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[2]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' Unarchiving bdist file /builddir/build/BUILD/moose-core-3.1.4/build/bdist/pymoose-3.1.4.CMAKE.tar.gz to /builddir/build/BUILD/moose-core-3.1.4/build/pymoose_bdist_install /usr/bin/cmake -E chdir /builddir/build/BUILD/moose-core-3.1.4/build/pymoose_bdist_install tar xvf /builddir/build/BUILD/moose-core-3.1.4/build/bdist/pymoose-3.1.4.CMAKE.tar.gz ./ ./usr/ ./usr/lib/ ./usr/lib/python3.7/ ./usr/lib/python3.7/site-packages/ ./usr/lib/python3.7/site-packages/moose/ ./usr/lib/python3.7/site-packages/moose/SBML/ ./usr/lib/python3.7/site-packages/moose/SBML/__init__.py ./usr/lib/python3.7/site-packages/moose/SBML/__pycache__/ ./usr/lib/python3.7/site-packages/moose/SBML/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/SBML/__pycache__/readSBML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/SBML/__pycache__/validation.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/SBML/__pycache__/writeSBML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/SBML/readSBML.py ./usr/lib/python3.7/site-packages/moose/SBML/validation.py ./usr/lib/python3.7/site-packages/moose/SBML/writeSBML.py ./usr/lib/python3.7/site-packages/moose/__init__.py ./usr/lib/python3.7/site-packages/moose/__pycache__/ ./usr/lib/python3.7/site-packages/moose/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/alternate.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/constants.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/graph_utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/graphutil.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/hdfutil.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/merge.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/methods_utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/moose.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/moose_config.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/moose_constants.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/moose_test.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/optimizer_interface.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/plot_utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/print_utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/recording.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/__pycache__/utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/_moose.so ./usr/lib/python3.7/site-packages/moose/alternate.py ./usr/lib/python3.7/site-packages/moose/chemUtil/ ./usr/lib/python3.7/site-packages/moose/chemUtil/__init__.py ./usr/lib/python3.7/site-packages/moose/chemUtil/__pycache__/ ./usr/lib/python3.7/site-packages/moose/chemUtil/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/chemUtil/__pycache__/add_Delete_ChemicalSolver.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/chemUtil/__pycache__/chemConnectUtil.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/chemUtil/__pycache__/graphUtils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/chemUtil/add_Delete_ChemicalSolver.py ./usr/lib/python3.7/site-packages/moose/chemUtil/chemConnectUtil.py ./usr/lib/python3.7/site-packages/moose/chemUtil/graphUtils.py ./usr/lib/python3.7/site-packages/moose/constants.py ./usr/lib/python3.7/site-packages/moose/genesis/ ./usr/lib/python3.7/site-packages/moose/genesis/__init__.py ./usr/lib/python3.7/site-packages/moose/genesis/__pycache__/ ./usr/lib/python3.7/site-packages/moose/genesis/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/genesis/__pycache__/writeKkit.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/genesis/writeKkit.py ./usr/lib/python3.7/site-packages/moose/graph_utils.py ./usr/lib/python3.7/site-packages/moose/graphutil.py ./usr/lib/python3.7/site-packages/moose/hdfutil.py ./usr/lib/python3.7/site-packages/moose/merge.py ./usr/lib/python3.7/site-packages/moose/methods_utils.py ./usr/lib/python3.7/site-packages/moose/moose.py ./usr/lib/python3.7/site-packages/moose/moose_config.py ./usr/lib/python3.7/site-packages/moose/moose_constants.py ./usr/lib/python3.7/site-packages/moose/moose_test.py ./usr/lib/python3.7/site-packages/moose/neuroml/ ./usr/lib/python3.7/site-packages/moose/neuroml/ChannelML.py ./usr/lib/python3.7/site-packages/moose/neuroml/MorphML.py ./usr/lib/python3.7/site-packages/moose/neuroml/NetworkML.py ./usr/lib/python3.7/site-packages/moose/neuroml/NeuroML.py ./usr/lib/python3.7/site-packages/moose/neuroml/__init__.py ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/ ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/ChannelML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/MorphML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/NetworkML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/NeuroML.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/__pycache__/utils.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml/utils.py ./usr/lib/python3.7/site-packages/moose/neuroml2/ ./usr/lib/python3.7/site-packages/moose/neuroml2/__init__.py ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/ ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/converter.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/generated_neuroml.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/generated_neuromlsub.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/hhfit.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/reader.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/test_converter.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/test_hhfit.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/test_reader.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/__pycache__/units.cpython-37.pyc ./usr/lib/python3.7/site-packages/moose/neuroml2/converter.py ./usr/lib/python3.7/site-packages/moose/neuroml2/generated_neuroml.py ./usr/lib/python3.7/site-packages/moose/neuroml2/generated_neuromlsub.py ./usr/lib/python3.7/site-packages/moose/neuroml2/hhfit.py ./usr/lib/python3.7/site-packages/moose/neuroml2/reader.py ./usr/lib/python3.7/site-packages/moose/neuroml2/test_converter.py ./usr/lib/python3.7/site-packages/moose/neuroml2/test_hhfit.py ./usr/lib/python3.7/site-packages/moose/neuroml2/test_reader.py ./usr/lib/python3.7/site-packages/moose/neuroml2/units.py ./usr/lib/python3.7/site-packages/moose/optimizer_interface.py ./usr/lib/python3.7/site-packages/moose/plot_utils.py ./usr/lib/python3.7/site-packages/moose/print_utils.py ./usr/lib/python3.7/site-packages/moose/recording.py ./usr/lib/python3.7/site-packages/moose/utils.py ./usr/lib/python3.7/site-packages/pymoose-3.1.4-py3.7.egg-info ./usr/lib/python3.7/site-packages/rdesigneur/ ./usr/lib/python3.7/site-packages/rdesigneur/__init__.py ./usr/lib/python3.7/site-packages/rdesigneur/__pycache__/ ./usr/lib/python3.7/site-packages/rdesigneur/__pycache__/__init__.cpython-37.pyc ./usr/lib/python3.7/site-packages/rdesigneur/__pycache__/rdesigneur.cpython-37.pyc ./usr/lib/python3.7/site-packages/rdesigneur/__pycache__/rdesigneurProtos.cpython-37.pyc ./usr/lib/python3.7/site-packages/rdesigneur/__pycache__/rmoogli.cpython-37.pyc ./usr/lib/python3.7/site-packages/rdesigneur/rdesigneur.py ./usr/lib/python3.7/site-packages/rdesigneur/rdesigneurProtos.py ./usr/lib/python3.7/site-packages/rdesigneur/rmoogli.py make[2]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' make[1]: Entering directory '/builddir/build/BUILD/moose-core-3.1.4/build' [100%] Built target bdist make[1]: Leaving directory '/builddir/build/BUILD/moose-core-3.1.4/build' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/moose-core-3.1.4/build/CMakeFiles 0 + cd python + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.cmake.py build '--executable=/usr/bin/python3 -s' Got 3.1.4 from VERSION file [INFO] Suffix is so running build running build_py + popd ~/build/BUILD/moose-core-3.1.4 + RPM_EC=0 BUILDSTDERR: ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.MBaYvF + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64 + cd moose-core-3.1.4 + install -D build/moose.bin /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/bin/moose + pushd build/python ~/build/BUILD/moose-core-3.1.4/build/python ~/build/BUILD/moose-core-3.1.4 + CFLAGS='-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld' + /usr/bin/python3 setup.cmake.py install -O1 --skip-build --root /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64 --install-lib=/usr/lib64/python3.7/site-packages Got 3.1.4 from VERSION file [INFO] Suffix is so running install running install_lib creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64 creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7 creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/optimizer_interface.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/alternate.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/_moose.so -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/methods_utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/moose_constants.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/graphutil.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_converter.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/converter.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_reader.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/generated_neuroml.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/test_hhfit.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/hhfit.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/generated_neuromlsub.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/units.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 copying build/lib/moose/neuroml2/reader.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2 creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/ChannelML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NeuroML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/NetworkML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/neuroml/MorphML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml copying build/lib/moose/moose_test.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/writeSBML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/validation.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML copying build/lib/moose/SBML/readSBML.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML copying build/lib/moose/moose_config.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/merge.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/genesis copying build/lib/moose/genesis/writeKkit.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/genesis copying build/lib/moose/genesis/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/genesis copying build/lib/moose/plot_utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/recording.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/print_utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/graph_utils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/moose.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/constants.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose copying build/lib/moose/hdfutil.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/add_Delete_ChemicalSolver.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/chemConnectUtil.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil copying build/lib/moose/chemUtil/graphUtils.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil creating /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneur.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rmoogli.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/__init__.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur copying build/lib/rdesigneur/rdesigneurProtos.py -> /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/optimizer_interface.py to optimizer_interface.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/alternate.py to alternate.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/methods_utils.py to methods_utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/moose_constants.py to moose_constants.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/graphutil.py to graphutil.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/test_converter.py to test_converter.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/converter.py to converter.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/test_reader.py to test_reader.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/generated_neuroml.py to generated_neuroml.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/test_hhfit.py to test_hhfit.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/hhfit.py to hhfit.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/generated_neuromlsub.py to generated_neuromlsub.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/units.py to units.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml2/reader.py to reader.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/ChannelML.py to ChannelML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/NeuroML.py to NeuroML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/utils.py to utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/NetworkML.py to NetworkML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/neuroml/MorphML.py to MorphML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/moose_test.py to moose_test.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML/writeSBML.py to writeSBML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML/validation.py to validation.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/SBML/readSBML.py to readSBML.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/moose_config.py to moose_config.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/merge.py to merge.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/genesis/writeKkit.py to writeKkit.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/genesis/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/plot_utils.py to plot_utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/recording.py to recording.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/print_utils.py to print_utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/utils.py to utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/graph_utils.py to graph_utils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/moose.py to moose.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/constants.py to constants.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/hdfutil.py to hdfutil.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil/add_Delete_ChemicalSolver.py to add_Delete_ChemicalSolver.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil/chemConnectUtil.py to chemConnectUtil.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/chemUtil/graphUtils.py to graphUtils.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur/rdesigneur.py to rdesigneur.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur/rmoogli.py to rmoogli.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur/__init__.py to __init__.cpython-37.pyc byte-compiling /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/rdesigneur/rdesigneurProtos.py to rdesigneurProtos.cpython-37.pyc writing byte-compilation script '/tmp/tmp9uxyrvcp.py' /usr/bin/python3 /tmp/tmp9uxyrvcp.py removing /tmp/tmp9uxyrvcp.py running install_egg_info Writing /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/pymoose-3.1.4-py3.7.egg-info + chmod +x /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/_moose.so + popd ~/build/BUILD/moose-core-3.1.4 + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 3.1.4-6.fc31 --unique-debug-suffix -3.1.4-6.fc31.riscv64 --unique-debug-src-base moose-3.1.4-6.fc31.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/moose-core-3.1.4 explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/_moose.so explicitly decompress any DWARF compressed ELF sections in /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/bin/moose extracting debug info from /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7/site-packages/moose/_moose.so extracting debug info from /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/bin/moose original debug info size: 188788kB, size after compression: 156624kB /usr/lib/rpm/sepdebugcrcfix: Updated 2 CRC32s, 0 CRC32s did match. BUILDSTDERR: 7742 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/redhat/brp-python-bytecompile /usr/bin/python 1 0 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib/debug/usr/lib64/python3.7 using /usr/bin/python3.7 Bytecompiling .py files below /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/lib64/python3.7 using /usr/bin/python3.7 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.bzzl7D + umask 022 + cd /builddir/build/BUILD + cd moose-core-3.1.4 + checksec --file /builddir/build/BUILDROOT/moose-3.1.4-6.fc31.riscv64/usr/bin/moose Error: Option Required. Usage: checksec [--format={cli,csv,xml,json}] [OPTION] Options: ## Checksec Options --file={file} --dir={directory} --proc={process name} --proc-all --proc-libs={process ID} --kernel[=kconfig] --fortify-file={executable-file} --fortify-proc={process ID} --version --help ## Modifiers --debug --verbose --format={cli,csv,xml,json} --output={cli,csv,xml,json} --extended For more information, see: http://github.com/slimm609/checksec.sh RPM build errors: BUILDSTDERR: error: Bad exit status from /var/tmp/rpm-tmp.bzzl7D (%check) BUILDSTDERR: Bad exit status from /var/tmp/rpm-tmp.bzzl7D (%check) Child return code was: 1 EXCEPTION: [Error()] Traceback (most recent call last): File "/usr/lib/python3.7/site-packages/mockbuild/trace_decorator.py", line 96, in trace result = func(*args, **kw) File "/usr/lib/python3.7/site-packages/mockbuild/util.py", line 700, in do raise exception.Error("Command failed: \n # %s\n%s" % (command, output), child.returncode) mockbuild.exception.Error: Command failed: # bash --login -c /usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/moose.spec