Mock Version: 5.5 Mock Version: 5.5 Mock Version: 5.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'ea63addc6fbc4e53b3b47f1dafd65bcb', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Wrote: /builddir/build/SRPMS/python-annarchy-4.8.1-1.fc41.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '83698377faad466c8dc9ef98f85dee1b', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Executing(%mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.gCxFkk + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + test -d /builddir/build/BUILD/python-annarchy-4.8.1-build + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w /builddir/build/BUILD/python-annarchy-4.8.1-build + /usr/bin/rm -rf /builddir/build/BUILD/python-annarchy-4.8.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build + /usr/bin/mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/SPECPARTS + RPM_EC=0 ++ jobs -p + exit 0 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.lOQPl1 + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + rm -rf ANNarchy-4.8.1 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/ANNarchy-4.8.1.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd ANNarchy-4.8.1 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.SHHcM6 + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires Handling setuptools from build-system.requires Requirement not satisfied: setuptools Handling Cython from build-system.requires Requirement not satisfied: Cython Handling numpy from build-system.requires Requirement not satisfied: numpy Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-annarchy-4.8.1-1.fc41.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '0e75c881631d4b3cb92f10912c8fde08', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.YIxVvj + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.9) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.26.4) Compiling ANNarchy/cython_ext/Connector.pyx because it changed. Compiling ANNarchy/cython_ext/Coordinates.pyx because it changed. Compiling ANNarchy/cython_ext/Transformations.pyx because it changed. [1/3] Cythonizing ANNarchy/cython_ext/Connector.pyx [2/3] Cythonizing ANNarchy/cython_ext/Coordinates.pyx [3/3] Cythonizing ANNarchy/cython_ext/Transformations.pyx running egg_info creating ANNarchy.egg-info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt writing manifest file 'ANNarchy.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement not satisfied: wheel Exiting dependency generation pass: get_requires_for_build_wheel + cat /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-annarchy-4.8.1-1.fc41.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '167abc292e854406b94a27db81ce0307', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.0UUaFW + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.9) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.26.4) running egg_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/ANNarchy-4.8.1.dist-info' Handling setuptools from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling cython from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: cython (installed: cython 3.0.9) Handling numpy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling sympy from hook generated metadata: Requires-Dist (ANNarchy) Requirement not satisfied: sympy Handling scipy from hook generated metadata: Requires-Dist (ANNarchy) Requirement not satisfied: scipy Handling matplotlib from hook generated metadata: Requires-Dist (ANNarchy) Requirement not satisfied: matplotlib Handling tqdm from hook generated metadata: Requires-Dist (ANNarchy) Requirement not satisfied: tqdm + cat /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires + rm -rfv ANNarchy-4.8.1.dist-info/ removed 'ANNarchy-4.8.1.dist-info/top_level.txt' removed 'ANNarchy-4.8.1.dist-info/METADATA' removed 'ANNarchy-4.8.1.dist-info/LICENSE' removed 'ANNarchy-4.8.1.dist-info/AUTHORS' removed directory 'ANNarchy-4.8.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-annarchy-4.8.1-1.fc41.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueraiseExc=FalseprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '010ac2dbad2b488194c469a18831dc5e', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.kaIGBT + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.9) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.26.4) running egg_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/ANNarchy-4.8.1.dist-info' Handling setuptools from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling cython from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: cython (installed: cython 3.0.9) Handling numpy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling sympy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: sympy (installed: sympy 1.13.0) Handling scipy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: matplotlib (installed: matplotlib 3.9.1) Handling tqdm from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: tqdm (installed: tqdm 4.66.5) + cat /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires + rm -rfv ANNarchy-4.8.1.dist-info/ removed 'ANNarchy-4.8.1.dist-info/top_level.txt' removed 'ANNarchy-4.8.1.dist-info/METADATA' removed 'ANNarchy-4.8.1.dist-info/LICENSE' removed 'ANNarchy-4.8.1.dist-info/AUTHORS' removed directory 'ANNarchy-4.8.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-annarchy-4.8.1-1.fc41.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'], chrootPath='/var/lib/mock/f41-build-848087-164378/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=604800uid=989gid=135user='mockbuild'nspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']unshare_net=TrueprintOutput=False) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'a8b83dff6af443678f4450b833a67b7c', '-D', '/var/lib/mock/f41-build-848087-164378/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1721865600 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.zMgugM + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(pip) >= 19' + echo 'python3dist(packaging)' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + RPM_TOXENV=py313 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires Handling setuptools from build-system.requires Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling Cython from build-system.requires Requirement satisfied: Cython (installed: Cython 3.0.9) Handling numpy from build-system.requires Requirement satisfied: numpy (installed: numpy 1.26.4) running egg_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' Handling wheel from get_requires_for_build_wheel Requirement satisfied: wheel (installed: wheel 0.43.0) running dist_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/ANNarchy-4.8.1.dist-info' Handling setuptools from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: setuptools (installed: setuptools 69.2.0) Handling cython from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: cython (installed: cython 3.0.9) Handling numpy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: numpy (installed: numpy 1.26.4) Handling sympy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: sympy (installed: sympy 1.13.0) Handling scipy from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: scipy (installed: scipy 1.11.3) Handling matplotlib from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: matplotlib (installed: matplotlib 3.9.1) Handling tqdm from hook generated metadata: Requires-Dist (ANNarchy) Requirement satisfied: tqdm (installed: tqdm 4.66.5) + cat /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-buildrequires + rm -rfv ANNarchy-4.8.1.dist-info/ removed 'ANNarchy-4.8.1.dist-info/top_level.txt' removed 'ANNarchy-4.8.1.dist-info/METADATA' removed 'ANNarchy-4.8.1.dist-info/LICENSE' removed 'ANNarchy-4.8.1.dist-info/AUTHORS' removed directory 'ANNarchy-4.8.1.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.bcK3Bp + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ANNarchy-4.8.1 + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir Processing /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1 Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) running dist_info creating /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info writing /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/dependency_links.txt writing requirements to /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/requires.txt writing top-level names to /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/SOURCES.txt' dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-modern-metadata-bluf4gq2/ANNarchy-4.8.1.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: ANNarchy Building wheel for ANNarchy (pyproject.toml): started Running command Building wheel for ANNarchy (pyproject.toml) running bdist_wheel running build Installing ANNarchy ... Python 3.13 ( /usr/bin/python3 ) Includes: `/usr/bin/python3.13-config --includes` Libraries: -L/usr/lib Cython: /usr/bin/cython Numpy: /usr/lib64/python3.13/site-packages/numpy/core/include Check annarchy.json Creating the configuration file in ~/.config/ANNarchy/annarchy.json Building Cython Extensions ... running build_py creating build creating build/lib.linux-riscv64-cpython-313 creating build/lib.linux-riscv64-cpython-313/ANNarchy copying ANNarchy/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy creating build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/ConnectorMethods.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Constant.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Dendrite.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Global.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/IO.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Monitor.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Network.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Neuron.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Population.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/PopulationView.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Projection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Random.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Simulate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Synapse.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/Utils.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core copying ANNarchy/core/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/core creating build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions copying ANNarchy/extensions/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/CmdLineArgParser.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/CodeGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/Compiler.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/MonitorGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/PyxGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/Sanity.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/Utils.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator copying ANNarchy/generator/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator creating build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/CurrentInjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/DecodingProjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/InputArray.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/PoissonPopulation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/SpikeSourceArray.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/SpikeTrains.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/TimedArray.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs copying ANNarchy/inputs/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/inputs creating build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/ConfigManagement.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/GlobalObjects.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/Messages.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/NetworkManager.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/Profiler.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/SpecificPopulation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/SpecificProjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern copying ANNarchy/intern/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/intern creating build/lib.linux-riscv64-cpython-313/ANNarchy/models copying ANNarchy/models/Neurons.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/models copying ANNarchy/models/Synapses.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/models copying ANNarchy/models/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/models creating build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/AnalyseNeuron.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/AnalyseSynapse.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/CoupledEquations.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/Equation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/Extraction.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/Function.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/ITE.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/ParserTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/StringManipulation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser copying ANNarchy/parser/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion copying ANNarchy/extensions/ann_to_snn_conversion/ANNtoSNNConverter.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion copying ANNarchy/extensions/ann_to_snn_conversion/InputEncoding.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion copying ANNarchy/extensions/ann_to_snn_conversion/ReadOut.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion copying ANNarchy/extensions/ann_to_snn_conversion/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/AccProjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/BoldModel.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/BoldMonitor.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/NormProjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/PredefinedModels.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold copying ANNarchy/extensions/bold/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/Convolve.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/ConvolveTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/Copy.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/CopyTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/Pooling.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/PoolingTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/Transpose.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/Utils.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution copying ANNarchy/extensions/convolution/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/diagonal copying ANNarchy/extensions/diagonal/DiagonalProjection.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/diagonal copying ANNarchy/extensions/diagonal/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/diagonal creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/hybrid copying ANNarchy/extensions/hybrid/HybridPopulation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/hybrid copying ANNarchy/extensions/hybrid/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/hybrid creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/image copying ANNarchy/extensions/image/ImagePopulation.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/image copying ANNarchy/extensions/image/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/image creating build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/tensorboard copying ANNarchy/extensions/tensorboard/Logger.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/tensorboard copying ANNarchy/extensions/tensorboard/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/tensorboard creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/CUDAGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/CUDATemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/OpenMPGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/OpenMPTemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/PopulationGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/SingleThreadGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/SingleThreadTemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population copying ANNarchy/generator/Population/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/CPP11Profile.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/CUDAProfile.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/PAPIProfile.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/ProfileGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/ProfileTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile copying ANNarchy/generator/Profile/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection copying ANNarchy/generator/Projection/CUDAGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection copying ANNarchy/generator/Projection/OpenMPGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection copying ANNarchy/generator/Projection/ProjectionGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection copying ANNarchy/generator/Projection/SingleThreadGenerator.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection copying ANNarchy/generator/Projection/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/BaseTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/GlobalOperationTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/MakefileTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/MonitorTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/PyxTemplate.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template copying ANNarchy/generator/Template/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/BSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/BaseTemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/COO.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/CSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/CSR_Scalar.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/CSR_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/CSR_Vector.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/Dense.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/Dense_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/ELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/ELLR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/HYB.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/SELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA copying ANNarchy/generator/Projection/CUDA/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/BSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/BaseTemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/COO.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/CSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/CSR_P.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/CSR_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/CSR_T_P.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/DIA.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/Dense.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/Dense_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/ELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/ELLR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/LIL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/LIL_P.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/SELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP copying ANNarchy/generator/Projection/OpenMP/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP creating build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/BSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/BaseTemplates.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/COO.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/CSR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/CSR_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/DIA.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/Dense.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/Dense_PV.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/Dense_PV_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/Dense_T.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/ELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/ELLR.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/HYB.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/LIL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/SELL.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread copying ANNarchy/generator/Projection/SingleThread/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread creating build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report copying ANNarchy/parser/report/LatexParser.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report copying ANNarchy/parser/report/LatexReport.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report copying ANNarchy/parser/report/MarkdownReport.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report copying ANNarchy/parser/report/Report.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report copying ANNarchy/parser/report/__init__.py -> build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report running egg_info writing ANNarchy.egg-info/PKG-INFO writing dependency_links to ANNarchy.egg-info/dependency_links.txt writing requirements to ANNarchy.egg-info/requires.txt writing top-level names to ANNarchy.egg-info/top_level.txt dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative dependency /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative reading manifest file 'ANNarchy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'ANNarchy/cython_ext/*.so' adding license file 'LICENSE' adding license file 'AUTHORS' writing manifest file 'ANNarchy.egg-info/SOURCES.txt' copying ANNarchy/cython_ext/Connector.pxd -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/Coordinates.pxd -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/__init__.pxd -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/Connector.pyx -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/Coordinates.pyx -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext copying ANNarchy/cython_ext/Transformations.pyx -> build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext creating build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/BSRInvMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/BSRMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/BSRMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/COOMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/COOMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRCMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRCMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRCMatrixCUDAT.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRCMatrixT.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/CSRMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/DenseMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/DenseMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/DenseMatrixOffsets.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/DiaMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/ELLMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/ELLMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/ELLRMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/ELLRMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/HYBMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/HYBMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/LILInvMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/LILMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/PartitionedMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/SELLMatrix.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/SELLMatrixCUDA.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/Specific.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/VecTransformation.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include copying ANNarchy/include/helper_functions.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/include creating build/lib.linux-riscv64-cpython-313/ANNarchy/thirdparty copying ANNarchy/thirdparty/randutils.hpp -> build/lib.linux-riscv64-cpython-313/ANNarchy/thirdparty running build_ext building 'ANNarchy.cython_ext.Connector' extension creating build/temp.linux-riscv64-cpython-313 creating build/temp.linux-riscv64-cpython-313/ANNarchy creating build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c ANNarchy/cython_ext/Connector.cpp -o build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.o -O3 In file included from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h:5, from ANNarchy/cython_ext/Connector.cpp:1240: /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.cpython-313-riscv64-linux-gnu.so building 'ANNarchy.cython_ext.Coordinates' extension gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c ANNarchy/cython_ext/Coordinates.cpp -o build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.o -O3 In file included from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h:5, from ANNarchy/cython_ext/Coordinates.cpp:1235: /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.cpython-313-riscv64-linux-gnu.so building 'ANNarchy.cython_ext.Transformations' extension gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -fexceptions -fexceptions -fexceptions -O3 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/usr/include/python3.13 -c ANNarchy/cython_ext/Transformations.cpp -o build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Transformations.o -O3 In file included from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/arrayobject.h:5, from ANNarchy/cython_ext/Transformations.cpp:1235: /usr/lib64/python3.13/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ g++ -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer build/temp.linux-riscv64-cpython-313/ANNarchy/cython_ext/Transformations.o -L/usr/lib64 -o build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Transformations.cpython-313-riscv64-linux-gnu.so installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64 creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/ANNarchy copying build/lib.linux-riscv64-cpython-313/ANNarchy/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy creating build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/ConnectorMethods.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Constant.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Dendrite.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Global.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/IO.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Monitor.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Network.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Neuron.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Population.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/PopulationView.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Projection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Random.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Simulate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Synapse.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/Utils.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core copying build/lib.linux-riscv64-cpython-313/ANNarchy/core/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/core creating build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.pxd -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.pxd -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/__init__.pxd -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.pyx -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.pyx -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Transformations.pyx -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Connector.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Coordinates.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext copying build/lib.linux-riscv64-cpython-313/ANNarchy/cython_ext/Transformations.cpython-313-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/ANNarchy/cython_ext creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/ann_to_snn_conversion copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion/ANNtoSNNConverter.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/ann_to_snn_conversion copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion/InputEncoding.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/ann_to_snn_conversion copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion/ReadOut.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/ann_to_snn_conversion copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/ann_to_snn_conversion/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/ann_to_snn_conversion creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/AccProjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/BoldModel.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/BoldMonitor.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/NormProjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/PredefinedModels.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/bold/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/bold creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/Convolve.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/ConvolveTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/Copy.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/CopyTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/Pooling.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/PoolingTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/Transpose.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/Utils.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/convolution/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/convolution creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/diagonal copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/diagonal/DiagonalProjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/diagonal copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/diagonal/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/diagonal creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/hybrid copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/hybrid/HybridPopulation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/hybrid copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/hybrid/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/hybrid creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/image copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/image/ImagePopulation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/image copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/image/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/image creating build/bdist.linux-riscv64/wheel/ANNarchy/extensions/tensorboard copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/tensorboard/Logger.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/tensorboard copying build/lib.linux-riscv64-cpython-313/ANNarchy/extensions/tensorboard/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/extensions/tensorboard creating build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/CmdLineArgParser.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/CodeGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Compiler.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/MonitorGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/PyxGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Sanity.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Utils.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/CUDAGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/CUDATemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/OpenMPGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/OpenMPTemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/PopulationGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/SingleThreadGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/SingleThreadTemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Population/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Population creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/CPP11Profile.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/CUDAProfile.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/PAPIProfile.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/ProfileGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/ProfileTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Profile/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Profile creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDAGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMPGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/ProjectionGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThreadGenerator.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/BSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/BaseTemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/COO.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/CSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/CSR_Scalar.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/CSR_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/CSR_Vector.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/Dense.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/Dense_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/ELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/ELLR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/HYB.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/SELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/CUDA/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/CUDA creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/BSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/BaseTemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/COO.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/CSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/CSR_P.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/CSR_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/CSR_T_P.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/DIA.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/Dense.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/Dense_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/ELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/ELLR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/LIL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/LIL_P.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/SELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/OpenMP/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/OpenMP creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/BSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/BaseTemplates.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/COO.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/CSR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/CSR_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/DIA.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/Dense.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/Dense_PV.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/Dense_PV_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/Dense_T.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/ELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/ELLR.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/HYB.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/LIL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/SELL.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Projection/SingleThread/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Projection/SingleThread creating build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/BaseTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/GlobalOperationTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/MakefileTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/MonitorTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/PyxTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template copying build/lib.linux-riscv64-cpython-313/ANNarchy/generator/Template/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/generator/Template creating build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/CurrentInjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/DecodingProjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/InputArray.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/PoissonPopulation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/SpikeSourceArray.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/SpikeTrains.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/TimedArray.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs copying build/lib.linux-riscv64-cpython-313/ANNarchy/inputs/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/inputs creating build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/ConfigManagement.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/GlobalObjects.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/Messages.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/NetworkManager.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/Profiler.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/SpecificPopulation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/SpecificProjection.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern copying build/lib.linux-riscv64-cpython-313/ANNarchy/intern/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/intern creating build/bdist.linux-riscv64/wheel/ANNarchy/models copying build/lib.linux-riscv64-cpython-313/ANNarchy/models/Neurons.py -> build/bdist.linux-riscv64/wheel/ANNarchy/models copying build/lib.linux-riscv64-cpython-313/ANNarchy/models/Synapses.py -> build/bdist.linux-riscv64/wheel/ANNarchy/models copying build/lib.linux-riscv64-cpython-313/ANNarchy/models/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/models creating build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/AnalyseNeuron.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/AnalyseSynapse.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/CoupledEquations.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/Equation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/Extraction.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/Function.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/ITE.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/ParserTemplate.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/StringManipulation.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser creating build/bdist.linux-riscv64/wheel/ANNarchy/parser/report copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report/LatexParser.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser/report copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report/LatexReport.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser/report copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report/MarkdownReport.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser/report copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report/Report.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser/report copying build/lib.linux-riscv64-cpython-313/ANNarchy/parser/report/__init__.py -> build/bdist.linux-riscv64/wheel/ANNarchy/parser/report creating build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/BSRInvMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/BSRMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/BSRMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/COOMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/COOMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRCMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRCMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRCMatrixCUDAT.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRCMatrixT.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/CSRMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/DenseMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/DenseMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/DenseMatrixOffsets.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/DiaMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/ELLMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/ELLMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/ELLRMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/ELLRMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/HYBMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/HYBMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/LILInvMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/LILMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/PartitionedMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/SELLMatrix.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/SELLMatrixCUDA.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/Specific.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/VecTransformation.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include copying build/lib.linux-riscv64-cpython-313/ANNarchy/include/helper_functions.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/include creating build/bdist.linux-riscv64/wheel/ANNarchy/thirdparty copying build/lib.linux-riscv64-cpython-313/ANNarchy/thirdparty/randutils.hpp -> build/bdist.linux-riscv64/wheel/ANNarchy/thirdparty running install_egg_info Copying ANNarchy.egg-info to build/bdist.linux-riscv64/wheel/ANNarchy-4.8.1-py3.13.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/ANNarchy-4.8.1.dist-info/WHEEL creating '/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir/pip-wheel-b9roqchz/.tmp-3_gfy93r/ANNarchy-4.8.1-cp313-cp313-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'ANNarchy/__init__.py' adding 'ANNarchy/core/ConnectorMethods.py' adding 'ANNarchy/core/Constant.py' adding 'ANNarchy/core/Dendrite.py' adding 'ANNarchy/core/Global.py' adding 'ANNarchy/core/IO.py' adding 'ANNarchy/core/Monitor.py' adding 'ANNarchy/core/Network.py' adding 'ANNarchy/core/Neuron.py' adding 'ANNarchy/core/Population.py' adding 'ANNarchy/core/PopulationView.py' adding 'ANNarchy/core/Projection.py' adding 'ANNarchy/core/Random.py' adding 'ANNarchy/core/Simulate.py' adding 'ANNarchy/core/Synapse.py' adding 'ANNarchy/core/Utils.py' adding 'ANNarchy/core/__init__.py' adding 'ANNarchy/cython_ext/Connector.cpython-313-riscv64-linux-gnu.so' adding 'ANNarchy/cython_ext/Connector.pxd' adding 'ANNarchy/cython_ext/Connector.pyx' adding 'ANNarchy/cython_ext/Coordinates.cpython-313-riscv64-linux-gnu.so' adding 'ANNarchy/cython_ext/Coordinates.pxd' adding 'ANNarchy/cython_ext/Coordinates.pyx' adding 'ANNarchy/cython_ext/Transformations.cpython-313-riscv64-linux-gnu.so' adding 'ANNarchy/cython_ext/Transformations.pyx' adding 'ANNarchy/cython_ext/__init__.pxd' adding 'ANNarchy/cython_ext/__init__.py' adding 'ANNarchy/extensions/__init__.py' adding 'ANNarchy/extensions/ann_to_snn_conversion/ANNtoSNNConverter.py' adding 'ANNarchy/extensions/ann_to_snn_conversion/InputEncoding.py' adding 'ANNarchy/extensions/ann_to_snn_conversion/ReadOut.py' adding 'ANNarchy/extensions/ann_to_snn_conversion/__init__.py' adding 'ANNarchy/extensions/bold/AccProjection.py' adding 'ANNarchy/extensions/bold/BoldModel.py' adding 'ANNarchy/extensions/bold/BoldMonitor.py' adding 'ANNarchy/extensions/bold/NormProjection.py' adding 'ANNarchy/extensions/bold/PredefinedModels.py' adding 'ANNarchy/extensions/bold/__init__.py' adding 'ANNarchy/extensions/convolution/Convolve.py' adding 'ANNarchy/extensions/convolution/ConvolveTemplate.py' adding 'ANNarchy/extensions/convolution/Copy.py' adding 'ANNarchy/extensions/convolution/CopyTemplate.py' adding 'ANNarchy/extensions/convolution/Pooling.py' adding 'ANNarchy/extensions/convolution/PoolingTemplate.py' adding 'ANNarchy/extensions/convolution/Transpose.py' adding 'ANNarchy/extensions/convolution/Utils.py' adding 'ANNarchy/extensions/convolution/__init__.py' adding 'ANNarchy/extensions/diagonal/DiagonalProjection.py' adding 'ANNarchy/extensions/diagonal/__init__.py' adding 'ANNarchy/extensions/hybrid/HybridPopulation.py' adding 'ANNarchy/extensions/hybrid/__init__.py' adding 'ANNarchy/extensions/image/ImagePopulation.py' adding 'ANNarchy/extensions/image/__init__.py' adding 'ANNarchy/extensions/tensorboard/Logger.py' adding 'ANNarchy/extensions/tensorboard/__init__.py' adding 'ANNarchy/generator/CmdLineArgParser.py' adding 'ANNarchy/generator/CodeGenerator.py' adding 'ANNarchy/generator/Compiler.py' adding 'ANNarchy/generator/MonitorGenerator.py' adding 'ANNarchy/generator/PyxGenerator.py' adding 'ANNarchy/generator/Sanity.py' adding 'ANNarchy/generator/Utils.py' adding 'ANNarchy/generator/__init__.py' adding 'ANNarchy/generator/Population/CUDAGenerator.py' adding 'ANNarchy/generator/Population/CUDATemplates.py' adding 'ANNarchy/generator/Population/OpenMPGenerator.py' adding 'ANNarchy/generator/Population/OpenMPTemplates.py' adding 'ANNarchy/generator/Population/PopulationGenerator.py' adding 'ANNarchy/generator/Population/SingleThreadGenerator.py' adding 'ANNarchy/generator/Population/SingleThreadTemplates.py' adding 'ANNarchy/generator/Population/__init__.py' adding 'ANNarchy/generator/Profile/CPP11Profile.py' adding 'ANNarchy/generator/Profile/CUDAProfile.py' adding 'ANNarchy/generator/Profile/PAPIProfile.py' adding 'ANNarchy/generator/Profile/ProfileGenerator.py' adding 'ANNarchy/generator/Profile/ProfileTemplate.py' adding 'ANNarchy/generator/Profile/__init__.py' adding 'ANNarchy/generator/Projection/CUDAGenerator.py' adding 'ANNarchy/generator/Projection/OpenMPGenerator.py' adding 'ANNarchy/generator/Projection/ProjectionGenerator.py' adding 'ANNarchy/generator/Projection/SingleThreadGenerator.py' adding 'ANNarchy/generator/Projection/__init__.py' adding 'ANNarchy/generator/Projection/CUDA/BSR.py' adding 'ANNarchy/generator/Projection/CUDA/BaseTemplates.py' adding 'ANNarchy/generator/Projection/CUDA/COO.py' adding 'ANNarchy/generator/Projection/CUDA/CSR.py' adding 'ANNarchy/generator/Projection/CUDA/CSR_Scalar.py' adding 'ANNarchy/generator/Projection/CUDA/CSR_T.py' adding 'ANNarchy/generator/Projection/CUDA/CSR_Vector.py' adding 'ANNarchy/generator/Projection/CUDA/Dense.py' adding 'ANNarchy/generator/Projection/CUDA/Dense_T.py' adding 'ANNarchy/generator/Projection/CUDA/ELL.py' adding 'ANNarchy/generator/Projection/CUDA/ELLR.py' adding 'ANNarchy/generator/Projection/CUDA/HYB.py' adding 'ANNarchy/generator/Projection/CUDA/SELL.py' adding 'ANNarchy/generator/Projection/CUDA/__init__.py' adding 'ANNarchy/generator/Projection/OpenMP/BSR.py' adding 'ANNarchy/generator/Projection/OpenMP/BaseTemplates.py' adding 'ANNarchy/generator/Projection/OpenMP/COO.py' adding 'ANNarchy/generator/Projection/OpenMP/CSR.py' adding 'ANNarchy/generator/Projection/OpenMP/CSR_P.py' adding 'ANNarchy/generator/Projection/OpenMP/CSR_T.py' adding 'ANNarchy/generator/Projection/OpenMP/CSR_T_P.py' adding 'ANNarchy/generator/Projection/OpenMP/DIA.py' adding 'ANNarchy/generator/Projection/OpenMP/Dense.py' adding 'ANNarchy/generator/Projection/OpenMP/Dense_T.py' adding 'ANNarchy/generator/Projection/OpenMP/ELL.py' adding 'ANNarchy/generator/Projection/OpenMP/ELLR.py' adding 'ANNarchy/generator/Projection/OpenMP/LIL.py' adding 'ANNarchy/generator/Projection/OpenMP/LIL_P.py' adding 'ANNarchy/generator/Projection/OpenMP/SELL.py' adding 'ANNarchy/generator/Projection/OpenMP/__init__.py' adding 'ANNarchy/generator/Projection/SingleThread/BSR.py' adding 'ANNarchy/generator/Projection/SingleThread/BaseTemplates.py' adding 'ANNarchy/generator/Projection/SingleThread/COO.py' adding 'ANNarchy/generator/Projection/SingleThread/CSR.py' adding 'ANNarchy/generator/Projection/SingleThread/CSR_T.py' adding 'ANNarchy/generator/Projection/SingleThread/DIA.py' adding 'ANNarchy/generator/Projection/SingleThread/Dense.py' adding 'ANNarchy/generator/Projection/SingleThread/Dense_PV.py' adding 'ANNarchy/generator/Projection/SingleThread/Dense_PV_T.py' adding 'ANNarchy/generator/Projection/SingleThread/Dense_T.py' adding 'ANNarchy/generator/Projection/SingleThread/ELL.py' adding 'ANNarchy/generator/Projection/SingleThread/ELLR.py' adding 'ANNarchy/generator/Projection/SingleThread/HYB.py' adding 'ANNarchy/generator/Projection/SingleThread/LIL.py' adding 'ANNarchy/generator/Projection/SingleThread/SELL.py' adding 'ANNarchy/generator/Projection/SingleThread/__init__.py' adding 'ANNarchy/generator/Template/BaseTemplate.py' adding 'ANNarchy/generator/Template/GlobalOperationTemplate.py' adding 'ANNarchy/generator/Template/MakefileTemplate.py' adding 'ANNarchy/generator/Template/MonitorTemplate.py' adding 'ANNarchy/generator/Template/PyxTemplate.py' adding 'ANNarchy/generator/Template/__init__.py' adding 'ANNarchy/include/BSRInvMatrix.hpp' adding 'ANNarchy/include/BSRMatrix.hpp' adding 'ANNarchy/include/BSRMatrixCUDA.hpp' adding 'ANNarchy/include/COOMatrix.hpp' adding 'ANNarchy/include/COOMatrixCUDA.hpp' adding 'ANNarchy/include/CSRCMatrix.hpp' adding 'ANNarchy/include/CSRCMatrixCUDA.hpp' adding 'ANNarchy/include/CSRCMatrixCUDAT.hpp' adding 'ANNarchy/include/CSRCMatrixT.hpp' adding 'ANNarchy/include/CSRMatrix.hpp' adding 'ANNarchy/include/CSRMatrixCUDA.hpp' adding 'ANNarchy/include/DenseMatrix.hpp' adding 'ANNarchy/include/DenseMatrixCUDA.hpp' adding 'ANNarchy/include/DenseMatrixOffsets.hpp' adding 'ANNarchy/include/DiaMatrix.hpp' adding 'ANNarchy/include/ELLMatrix.hpp' adding 'ANNarchy/include/ELLMatrixCUDA.hpp' adding 'ANNarchy/include/ELLRMatrix.hpp' adding 'ANNarchy/include/ELLRMatrixCUDA.hpp' adding 'ANNarchy/include/HYBMatrix.hpp' adding 'ANNarchy/include/HYBMatrixCUDA.hpp' adding 'ANNarchy/include/LILInvMatrix.hpp' adding 'ANNarchy/include/LILMatrix.hpp' adding 'ANNarchy/include/PartitionedMatrix.hpp' adding 'ANNarchy/include/SELLMatrix.hpp' adding 'ANNarchy/include/SELLMatrixCUDA.hpp' adding 'ANNarchy/include/Specific.hpp' adding 'ANNarchy/include/VecTransformation.hpp' adding 'ANNarchy/include/helper_functions.hpp' adding 'ANNarchy/inputs/CurrentInjection.py' adding 'ANNarchy/inputs/DecodingProjection.py' adding 'ANNarchy/inputs/InputArray.py' adding 'ANNarchy/inputs/PoissonPopulation.py' adding 'ANNarchy/inputs/SpikeSourceArray.py' adding 'ANNarchy/inputs/SpikeTrains.py' adding 'ANNarchy/inputs/TimedArray.py' adding 'ANNarchy/inputs/__init__.py' adding 'ANNarchy/intern/ConfigManagement.py' adding 'ANNarchy/intern/GlobalObjects.py' adding 'ANNarchy/intern/Messages.py' adding 'ANNarchy/intern/NetworkManager.py' adding 'ANNarchy/intern/Profiler.py' adding 'ANNarchy/intern/SpecificPopulation.py' adding 'ANNarchy/intern/SpecificProjection.py' adding 'ANNarchy/intern/__init__.py' adding 'ANNarchy/models/Neurons.py' adding 'ANNarchy/models/Synapses.py' adding 'ANNarchy/models/__init__.py' adding 'ANNarchy/parser/AnalyseNeuron.py' adding 'ANNarchy/parser/AnalyseSynapse.py' adding 'ANNarchy/parser/CoupledEquations.py' adding 'ANNarchy/parser/Equation.py' adding 'ANNarchy/parser/Extraction.py' adding 'ANNarchy/parser/Function.py' adding 'ANNarchy/parser/ITE.py' adding 'ANNarchy/parser/ParserTemplate.py' adding 'ANNarchy/parser/StringManipulation.py' adding 'ANNarchy/parser/__init__.py' adding 'ANNarchy/parser/report/LatexParser.py' adding 'ANNarchy/parser/report/LatexReport.py' adding 'ANNarchy/parser/report/MarkdownReport.py' adding 'ANNarchy/parser/report/Report.py' adding 'ANNarchy/parser/report/__init__.py' adding 'ANNarchy/thirdparty/randutils.hpp' adding 'ANNarchy-4.8.1.dist-info/AUTHORS' adding 'ANNarchy-4.8.1.dist-info/LICENSE' adding 'ANNarchy-4.8.1.dist-info/METADATA' adding 'ANNarchy-4.8.1.dist-info/WHEEL' adding 'ANNarchy-4.8.1.dist-info/top_level.txt' adding 'ANNarchy-4.8.1.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Building wheel for ANNarchy (pyproject.toml): finished with status 'done' Created wheel for ANNarchy: filename=ANNarchy-4.8.1-cp313-cp313-linux_riscv64.whl size=2074584 sha256=28c732fe37a33e4b970e3abf00ea55bb38e2550e9f976b2f8a8ed00c7010f1c9 Stored in directory: /builddir/.cache/pip/wheels/e0/04/89/1be96b933ff3ed25a80b54acc96f50f47be5af14f7b01215f4 Successfully built ANNarchy + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.sJgLwt + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + '[' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-annarchy-4.8.1-build + mkdir /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ANNarchy-4.8.1 ++ ls /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir/ANNarchy-4.8.1-cp313-cp313-linux_riscv64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=ANNarchy==4.8.1 + '[' -z ANNarchy==4.8.1 ']' + TMPDIR=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir ANNarchy==4.8.1 Using pip 24.2 from /usr/lib/python3.13/site-packages/pip (python 3.13) Looking in links: /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/pyproject-wheeldir Processing ./pyproject-wheeldir/ANNarchy-4.8.1-cp313-cp313-linux_riscv64.whl Installing collected packages: ANNarchy Successfully installed ANNarchy-4.8.1 + '[' -d /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages '!=' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib/python3.13/site-packages ']' + '[' -d /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages ']' + site_dirs+=("/usr/lib64/python3.13/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost /usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT --record /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/RECORD --output /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-record + rm -fv /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/RECORD removed '/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/REQUESTED removed '/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy-4.8.1.dist-info/REQUESTED' ++ wc -l /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + RPM_FILES_ESCAPE=4.19 + /usr/bin/python3 /usr/lib/rpm/redhat/pyproject_save_files.py --output-files /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-files --output-modules /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-modules --buildroot /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT --sitelib /usr/lib/python3.13/site-packages --sitearch /usr/lib64/python3.13/site-packages --python-version 3.13 --pyproject-record /builddir/build/BUILD/python-annarchy-4.8.1-build/python-annarchy-4.8.1-1.fc41.riscv64-pyproject-record --prefix /usr -l ANNarchy + /usr/bin/find-debuginfo -j4 --strict-build-id -m -i --build-id-seed 4.8.1-1.fc41 --unique-debug-suffix -4.8.1-1.fc41.riscv64 --unique-debug-src-base python-annarchy-4.8.1-1.fc41.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1 find-debuginfo: starting Extracting debug info from 3 files DWARF-compressing 3 files sepdebugcrcfix: Updated 3 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-annarchy-4.8.1-1.fc41.riscv64 4501 blocks find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j4 Bytecompiling .py files below /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13 using python3.13 Bytecompiling .py files below /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.13 using python3.13 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-determinism --brp -j4 /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT 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/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/parser/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/parser/__pycache__/Function.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/parser/__pycache__/Equation.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/__pycache__/__init__.cpython-313.pyc: rewriting with normalized contents /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/parser/__pycache__/Extraction.cpython-313.pyc: rewriting with normalized contents Scanned 70 directories and 529 files, processed 159 inodes, 159 modified (0 replaced + 159 rewritten), 0 unsupported format, 0 errors Reading /builddir/build/BUILD/python-annarchy-4.8.1-build/SPECPARTS/rpm-debuginfo.specpart Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.8nchu0 + umask 022 + cd /builddir/build/BUILD/python-annarchy-4.8.1-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd ANNarchy-4.8.1 + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + PATH=/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/sbin + PYTHONPATH=/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages:/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib/python3.13/site-packages + PYTHONDONTWRITEBYTECODE=1 + PYTEST_ADDOPTS=' --ignore=/builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/.pyproject-builddir' + PYTEST_XDIST_AUTO_NUM_WORKERS=4 + /usr/bin/pytest -v tests/test_openmp.py ============================= test session starts ============================== platform linux -- Python 3.13.0rc1, pytest-8.3.1, pluggy-1.5.0 -- /usr/bin/python3 cachedir: .pytest_cache rootdir: /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1 configfile: pyproject.toml collecting ... collected 318 items tests/test_openmp.py::test_ITE::test_works ERROR [ 0%] tests/test_openmp.py::test_Precision::test_precision FAILED [ 0%] tests/test_openmp.py::test_BuiltinFunctions::test_clip_above ERROR [ 0%] tests/test_openmp.py::test_BuiltinFunctions::test_clip_below ERROR [ 1%] tests/test_openmp.py::test_BuiltinFunctions::test_clip_within ERROR [ 1%] tests/test_openmp.py::test_BuiltinFunctions::test_integer_power ERROR [ 1%] tests/test_openmp.py::test_BuiltinFunctions::test_modulo ERROR [ 2%] tests/test_openmp.py::test_IO_Rate::test_parameters_save_and_load ERROR [ 2%] tests/test_openmp.py::test_IO_Rate::test_projection_save_and_load ERROR [ 2%] tests/test_openmp.py::test_IO_Rate::test_save_and_load ERROR [ 3%] tests/test_openmp.py::test_IO_Rate::test_save_mat ERROR [ 3%] tests/test_openmp.py::test_IO_Spiking::test_parameters_save_and_load ERROR [ 3%] tests/test_openmp.py::test_IO_Spiking::test_projection_save_and_load ERROR [ 4%] tests/test_openmp.py::test_IO_Spiking::test_save_and_load ERROR [ 4%] tests/test_openmp.py::test_IO_Spiking::test_save_mat ERROR [ 4%] tests/test_openmp.py::test_Record::test_a_pauserec ERROR [ 5%] tests/test_openmp.py::test_Record::test_popview ERROR [ 5%] tests/test_openmp.py::test_Record::test_popview2 ERROR [ 5%] tests/test_openmp.py::test_Record::test_r_after_5 ERROR [ 5%] tests/test_openmp.py::test_Record::test_r_first_neurons ERROR [ 6%] tests/test_openmp.py::test_Record::test_r_from_rank ERROR [ 6%] tests/test_openmp.py::test_Record::test_r_ref ERROR [ 6%] tests/test_openmp.py::test_Record::test_r_sim_10 ERROR [ 7%] tests/test_openmp.py::test_Record::test_r_sim_100_p_10 ERROR [ 7%] tests/test_openmp.py::test_Record::test_spike ERROR [ 7%] tests/test_openmp.py::test_Record::test_spike_ref Remove network ERROR [ 8%] tests/test_openmp.py::test_Record::test_startrec ERROR [ 8%] tests/test_openmp.py::test_Report_Rate::test_md_report ERROR [ 8%] tests/test_openmp.py::test_Report_Rate::test_tex_report ERROR [ 9%] tests/test_openmp.py::test_Report_Spiking::test_md_report ERROR [ 9%] tests/test_openmp.py::test_Report_Spiking::test_tex_report ERROR [ 9%] tests/test_openmp.py::test_TimedArray::test_compile ERROR [ 10%] tests/test_openmp.py::test_TimedArray::test_more_steps ERROR [ 10%] tests/test_openmp.py::test_TimedArray::test_run_one_loop ERROR [ 10%] tests/test_openmp.py::test_TimedArray::test_run_one_period ERROR [ 11%] tests/test_openmp.py::test_TimedArray::test_run_one_period_one_schedule ERROR [ 11%] tests/test_openmp.py::test_TimedArray::test_run_one_schedule ERROR [ 11%] tests/test_openmp.py::test_TimedArrayUpdate::test_compile ERROR [ 11%] tests/test_openmp.py::test_TimedArrayUpdate::test_run_one_loop ERROR [ 12%] tests/test_openmp.py::test_TimedArrayUpdate::test_run_one_loop_and_period ERROR [ 12%] tests/test_openmp.py::test_Population1D::test_coordinates_from_rank ERROR [ 12%] tests/test_openmp.py::test_Population1D::test_get_neuron_r ERROR [ 13%] tests/test_openmp.py::test_Population1D::test_get_neuron_tau ERROR [ 13%] tests/test_openmp.py::test_Population1D::test_get_r ERROR [ 13%] tests/test_openmp.py::test_Population1D::test_get_r2 ERROR [ 14%] tests/test_openmp.py::test_Population1D::test_get_r_with_init ERROR [ 14%] tests/test_openmp.py::test_Population1D::test_get_tau ERROR [ 14%] tests/test_openmp.py::test_Population1D::test_get_tau2 ERROR [ 15%] tests/test_openmp.py::test_Population1D::test_get_tau_population ERROR [ 15%] tests/test_openmp.py::test_Population1D::test_popattributes ERROR [ 15%] tests/test_openmp.py::test_Population1D::test_rank_from_coordinates ERROR [ 16%] tests/test_openmp.py::test_Population1D::test_reset ERROR [ 16%] tests/test_openmp.py::test_Population1D::test_set_neuron_tau ERROR [ 16%] tests/test_openmp.py::test_Population1D::test_set_r ERROR [ 16%] tests/test_openmp.py::test_Population1D::test_set_r3 ERROR [ 17%] tests/test_openmp.py::test_Population1D::test_set_r_2 ERROR [ 17%] tests/test_openmp.py::test_Population1D::test_set_r_uniform ERROR [ 17%] tests/test_openmp.py::test_Population1D::test_set_tau ERROR [ 18%] tests/test_openmp.py::test_Population1D::test_set_tau_2 ERROR [ 18%] tests/test_openmp.py::test_Population1D::test_set_tau_popview ERROR [ 18%] tests/test_openmp.py::test_Population2D::test_coordinates_from_rank ERROR [ 19%] tests/test_openmp.py::test_Population2D::test_get_neuron_r ERROR [ 19%] tests/test_openmp.py::test_Population2D::test_get_neuron_tau ERROR [ 19%] tests/test_openmp.py::test_Population2D::test_get_r ERROR [ 20%] tests/test_openmp.py::test_Population2D::test_get_r2 ERROR [ 20%] tests/test_openmp.py::test_Population2D::test_get_r_with_init ERROR [ 20%] tests/test_openmp.py::test_Population2D::test_get_tau ERROR [ 21%] tests/test_openmp.py::test_Population2D::test_get_tau2 ERROR [ 21%] tests/test_openmp.py::test_Population2D::test_get_tau_population ERROR [ 21%] tests/test_openmp.py::test_Population2D::test_popattributes ERROR [ 22%] tests/test_openmp.py::test_Population2D::test_rank_from_coordinates ERROR [ 22%] tests/test_openmp.py::test_Population2D::test_reset ERROR [ 22%] tests/test_openmp.py::test_Population2D::test_set_r ERROR [ 22%] tests/test_openmp.py::test_Population2D::test_set_r3 ERROR [ 23%] tests/test_openmp.py::test_Population2D::test_set_r_2 ERROR [ 23%] tests/test_openmp.py::test_Population2D::test_set_r_uniform ERROR [ 23%] tests/test_openmp.py::test_Population2D::test_set_tau ERROR [ 24%] tests/test_openmp.py::test_Population2D::test_set_tau_2 ERROR [ 24%] tests/test_openmp.py::test_Population2D::test_set_tau_popview ERROR [ 24%] tests/test_openmp.py::test_Population3D::test_coordinates_from_rank ERROR [ 25%] tests/test_openmp.py::test_Population3D::test_get_neuron_r ERROR [ 25%] tests/test_openmp.py::test_Population3D::test_get_neuron_tau ERROR [ 25%] tests/test_openmp.py::test_Population3D::test_get_r ERROR [ 26%] tests/test_openmp.py::test_Population3D::test_get_r2 ERROR [ 26%] tests/test_openmp.py::test_Population3D::test_get_r_with_init ERROR [ 26%] tests/test_openmp.py::test_Population3D::test_get_tau ERROR [ 27%] tests/test_openmp.py::test_Population3D::test_get_tau2 ERROR [ 27%] tests/test_openmp.py::test_Population3D::test_get_tau_population ERROR [ 27%] tests/test_openmp.py::test_Population3D::test_popattributes ERROR [ 27%] tests/test_openmp.py::test_Population3D::test_rank_from_coordinates ERROR [ 28%] tests/test_openmp.py::test_Population3D::test_reset ERROR [ 28%] tests/test_openmp.py::test_Population3D::test_set_r ERROR [ 28%] tests/test_openmp.py::test_Population3D::test_set_r3 ERROR [ 29%] tests/test_openmp.py::test_Population3D::test_set_r_2 ERROR [ 29%] tests/test_openmp.py::test_Population3D::test_set_r_uniform ERROR [ 29%] tests/test_openmp.py::test_Population3D::test_set_tau ERROR [ 30%] tests/test_openmp.py::test_Population3D::test_set_tau_2 ERROR [ 30%] tests/test_openmp.py::test_Population3D::test_set_tau_popview ERROR [ 30%] tests/test_openmp.py::test_Population2x3D::test_coordinates_from_rank ERROR [ 31%] tests/test_openmp.py::test_Population2x3D::test_get_neuron_r ERROR [ 31%] tests/test_openmp.py::test_Population2x3D::test_get_neuron_tau ERROR [ 31%] tests/test_openmp.py::test_Population2x3D::test_get_r ERROR [ 32%] tests/test_openmp.py::test_Population2x3D::test_get_r2 ERROR [ 32%] tests/test_openmp.py::test_Population2x3D::test_get_r_with_init ERROR [ 32%] tests/test_openmp.py::test_Population2x3D::test_get_tau ERROR [ 33%] tests/test_openmp.py::test_Population2x3D::test_get_tau2 ERROR [ 33%] tests/test_openmp.py::test_Population2x3D::test_get_tau_population ERROR [ 33%] tests/test_openmp.py::test_Population2x3D::test_popattributes ERROR [ 33%] tests/test_openmp.py::test_Population2x3D::test_rank_from_coordinates ERROR [ 34%] tests/test_openmp.py::test_Population2x3D::test_reset ERROR [ 34%] tests/test_openmp.py::test_Population2x3D::test_set_r ERROR [ 34%] tests/test_openmp.py::test_Population2x3D::test_set_r3 ERROR [ 35%] tests/test_openmp.py::test_Population2x3D::test_set_r_2 ERROR [ 35%] tests/test_openmp.py::test_Population2x3D::test_set_r_uniform ERROR [ 35%] tests/test_openmp.py::test_Population2x3D::test_set_tau ERROR [ 36%] tests/test_openmp.py::test_Population2x3D::test_set_tau_2 ERROR [ 36%] tests/test_openmp.py::test_Population2x3D::test_set_tau_popview ERROR [ 36%] tests/test_openmp.py::test_PopulationView::test_get_r ERROR [ 37%] tests/test_openmp.py::test_PopulationView::test_index_type ERROR [ 37%] tests/test_openmp.py::test_PopulationView::test_rank_assignment_column ERROR [ 37%] tests/test_openmp.py::test_PopulationView::test_rank_assignment_row ERROR [ 38%] tests/test_openmp.py::test_PopulationView::test_set_r ERROR [ 38%] tests/test_openmp.py::test_IndividualNeuron::test_get_r ERROR [ 38%] tests/test_openmp.py::test_IndividualNeuron::test_rank_assignment ERROR [ 38%] tests/test_openmp.py::test_IndividualNeuron::test_set_r ERROR [ 39%] tests/test_openmp.py::test_GlobalOps_1D::test_get_l1_norm ERROR [ 39%] tests/test_openmp.py::test_GlobalOps_1D::test_get_l2_norm ERROR [ 39%] tests/test_openmp.py::test_GlobalOps_1D::test_get_max_r ERROR [ 40%] tests/test_openmp.py::test_GlobalOps_1D::test_get_mean_r ERROR [ 40%] tests/test_openmp.py::test_GlobalOps_1D::test_get_min_r ERROR [ 40%] tests/test_openmp.py::test_GlobalOps_1D_Large::test_max_r ERROR [ 41%] tests/test_openmp.py::test_GlobalOps_1D_Large::test_mean_r ERROR [ 41%] tests/test_openmp.py::test_GlobalOps_1D_Large::test_min_r ERROR [ 41%] tests/test_openmp.py::test_GlobalOps_2D::test_get_l1_norm ERROR [ 42%] tests/test_openmp.py::test_GlobalOps_2D::test_get_max_r ERROR [ 42%] tests/test_openmp.py::test_GlobalOps_2D::test_get_mean_r ERROR [ 42%] tests/test_openmp.py::test_GlobalOps_2D::test_get_min_r ERROR [ 43%] tests/test_openmp.py::test_NeuronUpdate::test_bound_update ERROR [ 43%] tests/test_openmp.py::test_NeuronUpdate::test_single_update_global ERROR [ 43%] tests/test_openmp.py::test_NeuronUpdate::test_single_update_local ERROR [ 44%] tests/test_openmp.py::test_NeuronUpdate::test_single_update_mixed ERROR [ 44%] tests/test_openmp.py::test_SpikingCondition::test_v ERROR [ 44%] tests/test_openmp.py::test_SpikingCondition::test_v_conditioned ERROR [ 44%] tests/test_openmp.py::test_SpikingCondition::test_v_ref ERROR [ 45%] tests/test_openmp.py::test_CurrentInjection::test_compile ERROR [ 45%] tests/test_openmp.py::test_CurrentInjection::test_run_one_loop ERROR [ 45%] tests/test_openmp.py::test_StructuralPlasticityModel::test_invoke_compile ERROR [ 46%] tests/test_openmp.py::test_StructuralPlasticityModelDelay::test_invoke_compile ERROR [ 46%] tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_create_multiple_synapses ERROR [ 46%] tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_create_single_synapse ERROR [ 47%] tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_complete_dendrite ERROR [ 47%] tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_multiple_synapses ERROR [ 47%] tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_single_synapse ERROR [ 48%] tests/test_openmp.py::test_Convolution::test_bank_of_filters ERROR [ 48%] tests/test_openmp.py::test_Convolution::test_get_post_ranks ERROR [ 48%] tests/test_openmp.py::test_Convolution::test_get_size ERROR [ 49%] tests/test_openmp.py::test_Convolution::test_get_weights ERROR [ 49%] tests/test_openmp.py::test_Convolution::test_layer_wise_conv ERROR [ 49%] tests/test_openmp.py::test_Convolution::test_non_linear_conv ERROR [ 50%] tests/test_openmp.py::test_Convolution::test_post_max_convolution ERROR [ 50%] tests/test_openmp.py::test_Convolution::test_post_simple_convolution ERROR [ 50%] tests/test_openmp.py::test_Convolution::test_simple_bank_of_filters ERROR [ 50%] tests/test_openmp.py::test_Pooling::test_get_post_ranks ERROR [ 51%] tests/test_openmp.py::test_Pooling::test_get_size ERROR [ 51%] tests/test_openmp.py::test_Pooling::test_pool ERROR [ 51%] tests/test_openmp.py::test_Pooling::test_pool2 ERROR [ 52%] tests/test_openmp.py::test_RateTransmissionAllToAll_csr_post_to_pre::test_ranks ERROR [ 52%] tests/test_openmp.py::test_RateTransmissionAllToAll_csr_post_to_pre::test_weights ERROR [ 52%] tests/test_openmp.py::test_RateTransmissionAllToAll_ellr_post_to_pre::test_ranks ERROR [ 53%] tests/test_openmp.py::test_RateTransmissionAllToAll_ellr_post_to_pre::test_weights ERROR [ 53%] tests/test_openmp.py::test_RateTransmissionAllToAll_sell_post_to_pre::test_ranks ERROR [ 53%] tests/test_openmp.py::test_RateTransmissionAllToAll_sell_post_to_pre::test_weights ERROR [ 54%] tests/test_openmp.py::test_RateTransmissionAllToAll_dense_post_to_pre::test_ranks ERROR [ 54%] tests/test_openmp.py::test_RateTransmissionAllToAll_dense_post_to_pre::test_weights ERROR [ 54%] tests/test_openmp.py::test_RateTransmissionOneToOne_csr_post_to_pre::test_ranks ERROR [ 55%] tests/test_openmp.py::test_RateTransmissionOneToOne_csr_post_to_pre::test_weights ERROR [ 55%] tests/test_openmp.py::test_RateTransmissionOneToOne_ellr_post_to_pre::test_ranks ERROR [ 55%] tests/test_openmp.py::test_RateTransmissionOneToOne_ellr_post_to_pre::test_weights ERROR [ 55%] tests/test_openmp.py::test_RateTransmissionOneToOne_sell_post_to_pre::test_ranks ERROR [ 56%] tests/test_openmp.py::test_RateTransmissionOneToOne_sell_post_to_pre::test_weights ERROR [ 56%] tests/test_openmp.py::test_RateTransmissionFixedNumberPre_csr_post_to_pre::test_weights ERROR [ 56%] tests/test_openmp.py::test_RateTransmissionFixedNumberPre_ellr_post_to_pre::test_weights ERROR [ 57%] tests/test_openmp.py::test_RateTransmissionFixedNumberPre_sell_post_to_pre::test_weights ERROR [ 57%] tests/test_openmp.py::test_RateTransmissionFixedNumberPre_dense_post_to_pre::test_weights ERROR [ 57%] tests/test_openmp.py::test_CustomConnectivityNoDelay_lil_post_to_pre::test_invoke_compile ERROR [ 58%] tests/test_openmp.py::test_CustomConnectivityNoDelay_lil_post_to_pre::test_no_delay ERROR [ 58%] tests/test_openmp.py::test_CustomConnectivityNoDelay_csr_post_to_pre::test_invoke_compile ERROR [ 58%] tests/test_openmp.py::test_CustomConnectivityNoDelay_csr_post_to_pre::test_no_delay ERROR [ 59%] tests/test_openmp.py::test_CustomConnectivityNoDelay_ell_post_to_pre::test_invoke_compile ERROR [ 59%] tests/test_openmp.py::test_CustomConnectivityNoDelay_ell_post_to_pre::test_no_delay ERROR [ 59%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_lil_post_to_pre::test_invoke_compile ERROR [ 60%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_lil_post_to_pre::test_uniform_delay ERROR [ 60%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_csr_post_to_pre::test_invoke_compile ERROR [ 60%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_csr_post_to_pre::test_uniform_delay ERROR [ 61%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_ell_post_to_pre::test_invoke_compile ERROR [ 61%] tests/test_openmp.py::test_CustomConnectivityUniformDelay_ell_post_to_pre::test_uniform_delay ERROR [ 61%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_dendrite_size ERROR [ 61%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_get_dendrite_weights ERROR [ 62%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_none ERROR [ 62%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_pre_ranks ERROR [ 62%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_set_weights ERROR [ 63%] tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_set_weights_2 ERROR [ 63%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_dendrite_size ERROR [ 63%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_get_dendrite_weights ERROR [ 64%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_none ERROR [ 64%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_pre_ranks ERROR [ 64%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_set_weights ERROR [ 65%] tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_set_weights_2 ERROR [ 65%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_dendrite_size ERROR [ 65%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_get_dendrite_weights ERROR [ 66%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_none ERROR [ 66%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_pre_ranks ERROR [ 66%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_set_weights ERROR [ 66%] tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_set_weights_2 ERROR [ 67%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_dendrite_size ERROR [ 67%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_get_dendrite_weights ERROR [ 67%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_none ERROR [ 68%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_pre_ranks ERROR [ 68%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_set_weights ERROR [ 68%] tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_set_weights_2 ERROR [ 69%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_dendrite_size ERROR [ 69%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_by_name ERROR [ 69%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_alpha ERROR [ 70%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_tau ERROR [ 70%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_weights ERROR [ 70%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_none ERROR [ 71%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_pre_ranks ERROR [ 71%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_alpha ERROR [ 71%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_alpha_2 ERROR [ 72%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_tau ERROR [ 72%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_tau_2 ERROR [ 72%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_weights ERROR [ 72%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_weights_2 ERROR [ 73%] tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_with_dict ERROR [ 73%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_dendrite_size ERROR [ 73%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_by_name ERROR [ 74%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_alpha ERROR [ 74%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_tau ERROR [ 74%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_weights ERROR [ 75%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_none ERROR [ 75%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_pre_ranks ERROR [ 75%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_alpha ERROR [ 76%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_alpha_2 ERROR [ 76%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_tau ERROR [ 76%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_tau_2 ERROR [ 77%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_weights ERROR [ 77%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_weights_2 ERROR [ 77%] tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_with_dict ERROR [ 77%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_alpha ERROR [ 78%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_alpha_2 ERROR [ 78%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_dendrite_w ERROR [ 78%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_post_ranks ERROR [ 79%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_size ERROR [ 79%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_tau ERROR [ 79%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_tau_2 ERROR [ 80%] tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_w ERROR [ 80%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_alpha ERROR [ 80%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_alpha_2 ERROR [ 81%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_dendrite_w ERROR [ 81%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_post_ranks ERROR [ 81%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_size ERROR [ 82%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_tau ERROR [ 82%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_tau_2 ERROR [ 82%] tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_w ERROR [ 83%] tests/test_openmp.py::test_Locality_lil_post_to_pre::test_compile FAILED [ 83%] tests/test_openmp.py::test_Locality_csr_post_to_pre::test_compile FAILED [ 83%] tests/test_openmp.py::test_Locality_dense_post_to_pre::test_compile FAILED [ 83%] tests/test_openmp.py::test_AccessPSP_lil_post_to_pre::test_compile FAILED [ 84%] tests/test_openmp.py::test_AccessPSP_csr_post_to_pre::test_compile FAILED [ 84%] tests/test_openmp.py::test_AccessPSP_dense_post_to_pre::test_compile FAILED [ 84%] tests/test_openmp.py::test_ModifiedPSP_lil_post_to_pre::test_compile FAILED [ 85%] tests/test_openmp.py::test_ModifiedPSP_csr_post_to_pre::test_compile FAILED [ 85%] tests/test_openmp.py::test_ModifiedPSP_dense_post_to_pre::test_compile FAILED [ 85%] tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_all_to_all ERROR [ 86%] tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_fixed_number_pre ERROR [ 86%] tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_one_to_one ERROR [ 86%] tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_all_to_all ERROR [ 87%] tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_fixed_number_pre ERROR [ 87%] tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_one_to_one ERROR [ 87%] tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_all_to_all ERROR [ 88%] tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_fixed_number_pre ERROR [ 88%] tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_one_to_one ERROR [ 88%] tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_max ERROR [ 88%] tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_mean ERROR [ 89%] tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_min ERROR [ 89%] tests/test_openmp.py::test_SynapticAccess_lil_post_to_pre::test_compile ERROR [ 89%] tests/test_openmp.py::test_SynapticAccess_csr_post_to_pre::test_compile ERROR [ 90%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_configured_delay_global ERROR [ 90%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_configured_delay_local ERROR [ 90%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_get_delay ERROR [ 91%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_modified_delay_global ERROR [ 91%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_modified_delay_local ERROR [ 91%] tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_set_delay ERROR [ 92%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_configured_delay_global ERROR [ 92%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_configured_delay_local ERROR [ 92%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_get_delay ERROR [ 93%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_modified_delay_global ERROR [ 93%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_modified_delay_local ERROR [ 93%] tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_set_delay ERROR [ 94%] tests/test_openmp.py::test_PreSpike_lil_post_to_pre::test_w ERROR [ 94%] tests/test_openmp.py::test_PreSpike_csr_post_to_pre::test_w ERROR [ 94%] tests/test_openmp.py::test_PostSpike_lil_post_to_pre::test_w ERROR [ 94%] tests/test_openmp.py::test_PostSpike_csr_post_to_pre::test_w ERROR [ 95%] tests/test_openmp.py::test_TimeDependentUpdate_lil_post_to_pre::test_invoke_compile ERROR [ 95%] tests/test_openmp.py::test_TimeDependentUpdate_csr_post_to_pre::test_invoke_compile ERROR [ 95%] tests/test_openmp.py::test_SpikeTransmissionNoDelay_lil_post_to_pre::test_non_delay ERROR [ 96%] tests/test_openmp.py::test_SpikeTransmissionNoDelay_csr_post_to_pre::test_non_delay ERROR [ 96%] tests/test_openmp.py::test_SpikeTransmissionUniformDelay_lil_post_to_pre::test_uniform_delay ERROR [ 96%] tests/test_openmp.py::test_SpikeTransmissionUniformDelay_csr_post_to_pre::test_uniform_delay ERROR [ 97%] tests/test_openmp.py::test_RateCodedContinuousUpdate_lil_post_to_pre::test_invoke_compile ERROR [ 97%] tests/test_openmp.py::test_RateCodedContinuousUpdate_csr_post_to_pre::test_invoke_compile ERROR [ 97%] tests/test_openmp.py::test_RateCodedContinuousUpdate_dense_post_to_pre::test_invoke_compile ERROR [ 98%] tests/test_openmp.py::test_SpikingContinuousUpdate_lil_post_to_pre::test_invoke_compile ERROR [ 98%] tests/test_openmp.py::test_SpikingContinuousUpdate_csr_post_to_pre::test_invoke_compile ERROR [ 98%] tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_lil_post_to_pre::test_invoke_compile ERROR [ 99%] tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_csr_post_to_pre::test_invoke_compile ERROR [ 99%] tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_ell_post_to_pre::test_invoke_compile ERROR [ 99%] tests/test_openmp.py::test_SpikeTransmissionNonUniformDelay_lil_post_to_pre::test_nonuniform_delay ERROR [100%] ==================================== ERRORS ==================================== ____________________ ERROR at setup of test_ITE.test_works _____________________ cls = @classmethod def setUpClass(cls): """ Setup and compile the network for this tests """ SimpleITE = Neuron( equations = """ r = if (t is 1): 1.0 else: 0.0 """ ) NestedITE = Neuron( parameters = """ state = 1.0 """, equations = """ r = if (t <= 5): 0 else: if (t >= 7): 2 else: 1 """ ) ITEinODE = Neuron( equations = """ dr/dt = if t > 5: 1 else: 0 """ ) SimpleITE2 = Neuron( equations = """ r = ite(t is 1, 1.0, 0.0) """ ) NestedITE2 = Neuron( parameters = """ state = 2.0 """, equations = """ r = ite(state >= 2, 2, ite(state == 1, 1, 0)) """ ) ITEinODE2 = Neuron( equations = """ dr/dt = ite((t > 5) and (t <20), 1, 0) """ ) pop1 = Population(1, SimpleITE) pop2 = Population(1, NestedITE) pop3 = Population(1, ITEinODE) pop4 = Population(1, SimpleITE2) pop5 = Population(1, NestedITE2) pop6 = Population(1, ITEinODE2) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, pop5, pop6]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_ITE.py:96: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 1 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 1 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore1.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore1.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ___________ ERROR at setup of test_BuiltinFunctions.test_clip_above ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ BuiltinFuncs = Neuron( parameters=""" base = 2.0 """, equations = """ r = modulo(t,3) pr = power(base,3) clip_below = clip(-2, -1, 1) clip_within = clip(0, -1, 1) clip_above = clip(2, -1, 1) """ ) pop1 = Population(1, BuiltinFuncs) mon = Monitor(pop1, ['r', 'pr', 'clip_below', 'clip_within', 'clip_above']) cls.test_net = Network() cls.test_net.add([pop1, mon]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_BuiltinFunctions.py:55: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 1 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 1 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore1.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore1.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ___________ ERROR at setup of test_BuiltinFunctions.test_clip_below ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ BuiltinFuncs = Neuron( parameters=""" base = 2.0 """, equations = """ r = modulo(t,3) pr = power(base,3) clip_below = clip(-2, -1, 1) clip_within = clip(0, -1, 1) clip_above = clip(2, -1, 1) """ ) pop1 = Population(1, BuiltinFuncs) mon = Monitor(pop1, ['r', 'pr', 'clip_below', 'clip_within', 'clip_above']) cls.test_net = Network() cls.test_net.add([pop1, mon]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_BuiltinFunctions.py:55: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_BuiltinFunctions.test_clip_within ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ BuiltinFuncs = Neuron( parameters=""" base = 2.0 """, equations = """ r = modulo(t,3) pr = power(base,3) clip_below = clip(-2, -1, 1) clip_within = clip(0, -1, 1) clip_above = clip(2, -1, 1) """ ) pop1 = Population(1, BuiltinFuncs) mon = Monitor(pop1, ['r', 'pr', 'clip_below', 'clip_within', 'clip_above']) cls.test_net = Network() cls.test_net.add([pop1, mon]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_BuiltinFunctions.py:55: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __________ ERROR at setup of test_BuiltinFunctions.test_integer_power __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ BuiltinFuncs = Neuron( parameters=""" base = 2.0 """, equations = """ r = modulo(t,3) pr = power(base,3) clip_below = clip(-2, -1, 1) clip_within = clip(0, -1, 1) clip_above = clip(2, -1, 1) """ ) pop1 = Population(1, BuiltinFuncs) mon = Monitor(pop1, ['r', 'pr', 'clip_below', 'clip_within', 'clip_above']) cls.test_net = Network() cls.test_net.add([pop1, mon]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_BuiltinFunctions.py:55: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_BuiltinFunctions.test_modulo ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ BuiltinFuncs = Neuron( parameters=""" base = 2.0 """, equations = """ r = modulo(t,3) pr = power(base,3) clip_below = clip(-2, -1, 1) clip_within = clip(0, -1, 1) clip_above = clip(2, -1, 1) """ ) pop1 = Population(1, BuiltinFuncs) mon = Monitor(pop1, ['r', 'pr', 'clip_below', 'clip_within', 'clip_above']) cls.test_net = Network() cls.test_net.add([pop1, mon]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_BuiltinFunctions.py:55: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_IO_Rate.test_parameters_save_and_load _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj2, cls.proj3 = define_rate_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:57: in define_rate_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 2 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 2 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 1 ) for projection proj0 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj0 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj0 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj1 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj1 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj1 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj2 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj2 and single_matrix = True Selected LILMatrix ( 4, 1 ) for projection proj2 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore2.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore2.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _________ ERROR at setup of test_IO_Rate.test_projection_save_and_load _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj2, cls.proj3 = define_rate_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:57: in define_rate_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_IO_Rate.test_save_and_load _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj2, cls.proj3 = define_rate_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:57: in define_rate_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_IO_Rate.test_save_mat _________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj2, cls.proj3 = define_rate_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:57: in define_rate_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_IO_Spiking.test_parameters_save_and_load ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj1, cls.proj2 = define_spike_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:97: in define_spike_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 3 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 3 ... Generate code for OpenMP ... Selected LILInvMatrix ( 1, 1 ) for projection proj3 and single_matrix = True Selected LILInvMatrix ( 1, 1 ) for projection proj3 and single_matrix = True Selected LILInvMatrix ( 1, 1 ) for projection proj3 and single_matrix = True Selected LILInvMatrix ( 4, 1 ) for projection proj4 and single_matrix = True Selected LILInvMatrix ( 4, 1 ) for projection proj4 and single_matrix = True Selected LILInvMatrix ( 4, 1 ) for projection proj4 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore3.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore3.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _______ ERROR at setup of test_IO_Spiking.test_projection_save_and_load ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj1, cls.proj2 = define_spike_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:97: in define_spike_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_IO_Spiking.test_save_and_load _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj1, cls.proj2 = define_spike_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:97: in define_spike_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_IO_Spiking.test_save_mat ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > cls.network, cls.pop2, cls.proj1, cls.proj2 = define_spike_net() /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_IO.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/networks.py:97: in define_spike_net network.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Record.test_a_pauserec _________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 4 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 4 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 3 ) for projection proj0 and single_matrix = True Selected LILMatrix ( 5, 3 ) for projection proj0 and single_matrix = True Selected LILMatrix ( 5, 3 ) for projection proj0 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore4.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore4.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________________ ERROR at setup of test_Record.test_popview __________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_Record.test_popview2 __________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_Record.test_r_after_5 _________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Record.test_r_first_neurons ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Record.test_r_from_rank ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________________ ERROR at setup of test_Record.test_r_ref ___________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_Record.test_r_sim_10 __________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Record.test_r_sim_100_p_10 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________________ ERROR at setup of test_Record.test_spike ___________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_Record.test_spike_ref _________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________________ ERROR at setup of test_Record.test_startrec __________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, pop4, proj, m, n, o, p, q, r, s, t]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Record.py:100: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Report_Rate.test_md_report _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > Constant('mu', 0.2) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Report.py:39: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Constant.py:51: in __init__ GlobalObjectManager().add_constant(self) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/GlobalObjects.py:95: in add_constant Messages._error('the constant', new_constant.name, 'is already defined.') _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ var_text = ('the constant', 'mu', 'is already defined.'), args = {} text = 'the constant mu is already defined. ', var = 'is already defined.' exit = True def _error(*var_text, **args): """ Prints an error message to standard out and exits. When passing exit=False, the program will not exit. """ text = '' for var in var_text: text += str(var) + ' ' exit = False if 'exit' in args.keys(): if args['exit']: exit = True else: exit = True if exit: > raise ANNarchyException(text) E ANNarchy.intern.Messages.ANNarchyException: the constant mu is already defined. /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/Messages.py:102: ANNarchyException ______________ ERROR at setup of test_Report_Rate.test_tex_report ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > Constant('mu', 0.2) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Report.py:39: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Constant.py:51: in __init__ GlobalObjectManager().add_constant(self) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/GlobalObjects.py:95: in add_constant Messages._error('the constant', new_constant.name, 'is already defined.') _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ var_text = ('the constant', 'mu', 'is already defined.'), args = {} text = 'the constant mu is already defined. ', var = 'is already defined.' exit = True def _error(*var_text, **args): """ Prints an error message to standard out and exits. When passing exit=False, the program will not exit. """ text = '' for var in var_text: text += str(var) + ' ' exit = False if 'exit' in args.keys(): if args['exit']: exit = True else: exit = True if exit: > raise ANNarchyException(text) E ANNarchy.intern.Messages.ANNarchyException: the constant mu is already defined. /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/Messages.py:102: ANNarchyException _____________ ERROR at setup of test_Report_Spiking.test_md_report _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > Constant('b', 0.2) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Report.py:123: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Constant.py:51: in __init__ GlobalObjectManager().add_constant(self) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/GlobalObjects.py:95: in add_constant Messages._error('the constant', new_constant.name, 'is already defined.') _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ var_text = ('the constant', 'b', 'is already defined.'), args = {} text = 'the constant b is already defined. ', var = 'is already defined.' exit = True def _error(*var_text, **args): """ Prints an error message to standard out and exits. When passing exit=False, the program will not exit. """ text = '' for var in var_text: text += str(var) + ' ' exit = False if 'exit' in args.keys(): if args['exit']: exit = True else: exit = True if exit: > raise ANNarchyException(text) E ANNarchy.intern.Messages.ANNarchyException: the constant b is already defined. /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/Messages.py:102: ANNarchyException ____________ ERROR at setup of test_Report_Spiking.test_tex_report _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ > Constant('b', 0.2) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_Report.py:123: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Constant.py:51: in __init__ GlobalObjectManager().add_constant(self) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/GlobalObjects.py:95: in add_constant Messages._error('the constant', new_constant.name, 'is already defined.') _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ var_text = ('the constant', 'b', 'is already defined.'), args = {} text = 'the constant b is already defined. ', var = 'is already defined.' exit = True def _error(*var_text, **args): """ Prints an error message to standard out and exits. When passing exit=False, the program will not exit. """ text = '' for var in var_text: text += str(var) + ' ' exit = False if 'exit' in args.keys(): if args['exit']: exit = True else: exit = True if exit: > raise ANNarchyException(text) E ANNarchy.intern.Messages.ANNarchyException: the constant b is already defined. /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/intern/Messages.py:102: ANNarchyException ________________ ERROR at setup of test_TimedArray.test_compile ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 5 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 5 ... Generate code for OpenMP ... Selected LILMatrix ( 10, 10 ) for projection proj5 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj5 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj5 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj6 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj6 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj6 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj7 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj7 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj7 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj8 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj8 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj8 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore5.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore5.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ______________ ERROR at setup of test_TimedArray.test_more_steps _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_TimedArray.test_run_one_loop ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_TimedArray.test_run_one_period _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_TimedArray.test_run_one_period_one_schedule ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_TimedArray.test_run_one_schedule ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation ( section 3.7.3 Class TimedArray ) """ inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc) r2 = sum(exc2) r3 = sum(exc3) r4 = sum(exc4) """ ) inp = TimedArray(rates=inputs) inp2 = TimedArray(rates=inputs, schedule=10.) inp3 = TimedArray(rates=inputs, period=10.) inp4 = TimedArray(rates=inputs, schedule=2., period=20.) pop = Population(10, neuron=SimpleNeuron) proj = Projection(inp, pop, 'exc') proj.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc2') proj2.connect_one_to_one(1.0) proj3 = Projection(inp3, pop, 'exc3') proj3.connect_one_to_one(1.0) proj4 = Projection(inp4, pop, 'exc4') proj4.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, inp3, inp4, pop, proj, proj2, proj3, proj4]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:79: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_TimedArrayUpdate.test_compile _____________ cls = @classmethod def setUpClass(cls): cls.initial_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) cls.overwrite_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 2], [0, 1, 0, 0, 0, 0, 0, 0, 2, 0], [0, 0, 1, 0, 0, 0, 0, 2, 0, 0], [0, 0, 0, 1, 0, 0, 2, 0, 0, 0], [0, 0, 0, 0, 1, 2, 0, 0, 0, 0], [0, 0, 0, 0, 2, 1, 0, 0, 0, 0], [0, 0, 0, 2, 0, 0, 1, 0, 0, 0], [0, 0, 2, 0, 0, 0, 0, 1, 0, 0], [0, 2, 0, 0, 0, 0, 0, 0, 1, 0], [2, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc_1) + sum(exc_2) """ ) inp = TimedArray(rates=cls.initial_inputs) inp2 = TimedArray(rates=cls.initial_inputs, schedule=2.) pop = Population(10, neuron=SimpleNeuron) proj1 = Projection(inp, pop, 'exc_1') proj1.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc_2') proj2.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, pop, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:200: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 6 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 6 ... Generate code for OpenMP ... Selected LILMatrix ( 10, 10 ) for projection proj9 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj9 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj9 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj10 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj10 and single_matrix = True Selected LILMatrix ( 10, 10 ) for projection proj10 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore6.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore6.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________ ERROR at setup of test_TimedArrayUpdate.test_run_one_loop ___________ cls = @classmethod def setUpClass(cls): cls.initial_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) cls.overwrite_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 2], [0, 1, 0, 0, 0, 0, 0, 0, 2, 0], [0, 0, 1, 0, 0, 0, 0, 2, 0, 0], [0, 0, 0, 1, 0, 0, 2, 0, 0, 0], [0, 0, 0, 0, 1, 2, 0, 0, 0, 0], [0, 0, 0, 0, 2, 1, 0, 0, 0, 0], [0, 0, 0, 2, 0, 0, 1, 0, 0, 0], [0, 0, 2, 0, 0, 0, 0, 1, 0, 0], [0, 2, 0, 0, 0, 0, 0, 0, 1, 0], [2, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc_1) + sum(exc_2) """ ) inp = TimedArray(rates=cls.initial_inputs) inp2 = TimedArray(rates=cls.initial_inputs, schedule=2.) pop = Population(10, neuron=SimpleNeuron) proj1 = Projection(inp, pop, 'exc_1') proj1.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc_2') proj2.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, pop, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:200: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____ ERROR at setup of test_TimedArrayUpdate.test_run_one_loop_and_period _____ cls = @classmethod def setUpClass(cls): cls.initial_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 0], [0, 1, 0, 0, 0, 0, 0, 0, 0, 0], [0, 0, 1, 0, 0, 0, 0, 0, 0, 0], [0, 0, 0, 1, 0, 0, 0, 0, 0, 0], [0, 0, 0, 0, 1, 0, 0, 0, 0, 0], [0, 0, 0, 0, 0, 1, 0, 0, 0, 0], [0, 0, 0, 0, 0, 0, 1, 0, 0, 0], [0, 0, 0, 0, 0, 0, 0, 1, 0, 0], [0, 0, 0, 0, 0, 0, 0, 0, 1, 0], [0, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) cls.overwrite_inputs = np.array( [ [1, 0, 0, 0, 0, 0, 0, 0, 0, 2], [0, 1, 0, 0, 0, 0, 0, 0, 2, 0], [0, 0, 1, 0, 0, 0, 0, 2, 0, 0], [0, 0, 0, 1, 0, 0, 2, 0, 0, 0], [0, 0, 0, 0, 1, 2, 0, 0, 0, 0], [0, 0, 0, 0, 2, 1, 0, 0, 0, 0], [0, 0, 0, 2, 0, 0, 1, 0, 0, 0], [0, 0, 2, 0, 0, 0, 0, 1, 0, 0], [0, 2, 0, 0, 0, 0, 0, 0, 1, 0], [2, 0, 0, 0, 0, 0, 0, 0, 0, 1] ] ) SimpleNeuron = Neuron( equations=""" r = sum(exc_1) + sum(exc_2) """ ) inp = TimedArray(rates=cls.initial_inputs) inp2 = TimedArray(rates=cls.initial_inputs, schedule=2.) pop = Population(10, neuron=SimpleNeuron) proj1 = Projection(inp, pop, 'exc_1') proj1.connect_one_to_one(1.0) proj2 = Projection(inp2, pop, 'exc_2') proj2.connect_one_to_one(1.0) cls.test_net = Network() cls.test_net.add([inp, inp2, pop, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Interface/test_TimedArray.py:200: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population1D.test_coordinates_from_rank ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 7 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 7 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore7.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore7.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_Population1D.test_get_neuron_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population1D.test_get_neuron_tau ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population1D.test_get_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population1D.test_get_r2 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population1D.test_get_r_with_init ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population1D.test_get_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population1D.test_get_tau2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_Population1D.test_get_tau_population __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population1D.test_popattributes ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population1D.test_rank_from_coordinates ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population1D.test_reset ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population1D.test_set_neuron_tau ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population1D.test_set_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population1D.test_set_r3 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population1D.test_set_r_2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population1D.test_set_r_uniform ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population1D.test_set_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population1D.test_set_tau_2 ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population1D.test_set_tau_popview ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases cls.test_net = Network() cls.test_net.add([tc1_pop1, tc1_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population2D.test_coordinates_from_rank ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 8 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 8 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore8.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore8.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_Population2D.test_get_neuron_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population2D.test_get_neuron_tau ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population2D.test_get_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2D.test_get_r2 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population2D.test_get_r_with_init ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2D.test_get_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2D.test_get_tau2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_Population2D.test_get_tau_population __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population2D.test_popattributes ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population2D.test_rank_from_coordinates ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population2D.test_reset ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population2D.test_set_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2D.test_set_r3 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2D.test_set_r_2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population2D.test_set_r_uniform ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2D.test_set_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2D.test_set_tau_2 ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population2D.test_set_tau_popview ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc2_pop1, tc2_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:274: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population3D.test_coordinates_from_rank ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 9 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 9 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore9.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore9.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_Population3D.test_get_neuron_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population3D.test_get_neuron_tau ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population3D.test_get_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population3D.test_get_r2 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population3D.test_get_r_with_init ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population3D.test_get_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population3D.test_get_tau2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_Population3D.test_get_tau_population __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population3D.test_popattributes ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population3D.test_rank_from_coordinates ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population3D.test_reset ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_Population3D.test_set_r ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population3D.test_set_r3 ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population3D.test_set_r_2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_Population3D.test_set_r_uniform ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population3D.test_set_tau _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population3D.test_set_tau_2 ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population3D.test_set_tau_popview ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc3_pop1, tc3_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:488: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Population2x3D.test_coordinates_from_rank _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 10 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 10 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore10.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore10.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ___________ ERROR at setup of test_Population2x3D.test_get_neuron_r ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __________ ERROR at setup of test_Population2x3D.test_get_neuron_tau ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2x3D.test_get_r _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2x3D.test_get_r2 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __________ ERROR at setup of test_Population2x3D.test_get_r_with_init __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2x3D.test_get_tau ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_Population2x3D.test_get_tau2 ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Population2x3D.test_get_tau_population _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population2x3D.test_popattributes ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Population2x3D.test_rank_from_coordinates _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2x3D.test_reset _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Population2x3D.test_set_r _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2x3D.test_set_r3 _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2x3D.test_set_r_2 ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Population2x3D.test_set_r_uniform ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Population2x3D.test_set_tau ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_Population2x3D.test_set_tau_2 _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __________ ERROR at setup of test_Population2x3D.test_set_tau_popview __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([tc4_pop1, tc4_pop2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_Population.py:725: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_PopulationView.test_get_r _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_PopulationView.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 11 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 11 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore11.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore11.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_PopulationView.test_index_type _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_PopulationView.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_PopulationView.test_rank_assignment_column _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_PopulationView.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_PopulationView.test_rank_assignment_row ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_PopulationView.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_PopulationView.test_set_r _______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_PopulationView.py:50: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_IndividualNeuron.test_get_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_IndividualNeuron.py:47: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 12 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 12 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore12.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore12.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _________ ERROR at setup of test_IndividualNeuron.test_rank_assignment _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_IndividualNeuron.py:47: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_IndividualNeuron.test_set_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ cls.test_net = Network() cls.test_net.add([pop1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_IndividualNeuron.py:47: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_1D.test_get_l1_norm _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(6, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 13 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 13 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore13.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore13.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _____________ ERROR at setup of test_GlobalOps_1D.test_get_l2_norm _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(6, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_GlobalOps_1D.test_get_max_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(6, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_1D.test_get_mean_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(6, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_GlobalOps_1D.test_get_min_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(6, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_1D_Large.test_max_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(500, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:156: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 14 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 14 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore14.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore14.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_GlobalOps_1D_Large.test_mean_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(500, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:156: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_1D_Large.test_min_r _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population(500, neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:156: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_2D.test_get_l1_norm _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population((2, 3), neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:239: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 15 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 15 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore15.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore15.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ______________ ERROR at setup of test_GlobalOps_2D.test_get_max_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population((2, 3), neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:239: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_GlobalOps_2D.test_get_mean_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population((2, 3), neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:239: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_GlobalOps_2D.test_get_min_r ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """, equations=""" mean_r = mean(r) max_r = max(r) min_r = min(r) l1 = norm1(r) l2 = norm2(r) """ ) pop = Population((2, 3), neuron) cls.test_net = Network() cls.test_net.add([pop]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_GlobalOperations.py:239: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____________ ERROR at setup of test_NeuronUpdate.test_bound_update _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases local_eq = Neuron( equations=""" noise = Uniform(0,1) r = t """ ) global_eq = Neuron( equations=""" noise = Uniform(0,1) : population glob_r = t : population r = t """ ) mixed_eq = Neuron( parameters="glob_par = 1.0: population", equations=""" r = t + glob_par """ ) bound_eq = Neuron( parameters=""" min_r=1.0: population max_r=3.0: population """, equations=""" r = t : min=min_r, max=max_r """ ) tc_loc_up_pop = Population(3, local_eq) tc_glob_up_pop = Population(3, global_eq) tc_mixed_up_pop = Population(3, mixed_eq) tc_bound_up_pop = Population(3, bound_eq) m = Monitor(tc_bound_up_pop, 'r') cls.test_net = Network() cls.test_net.add([tc_loc_up_pop, tc_glob_up_pop, tc_mixed_up_pop, tc_bound_up_pop, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_NeuronUpdate.py:81: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 16 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 16 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore16.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore16.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ________ ERROR at setup of test_NeuronUpdate.test_single_update_global _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases local_eq = Neuron( equations=""" noise = Uniform(0,1) r = t """ ) global_eq = Neuron( equations=""" noise = Uniform(0,1) : population glob_r = t : population r = t """ ) mixed_eq = Neuron( parameters="glob_par = 1.0: population", equations=""" r = t + glob_par """ ) bound_eq = Neuron( parameters=""" min_r=1.0: population max_r=3.0: population """, equations=""" r = t : min=min_r, max=max_r """ ) tc_loc_up_pop = Population(3, local_eq) tc_glob_up_pop = Population(3, global_eq) tc_mixed_up_pop = Population(3, mixed_eq) tc_bound_up_pop = Population(3, bound_eq) m = Monitor(tc_bound_up_pop, 'r') cls.test_net = Network() cls.test_net.add([tc_loc_up_pop, tc_glob_up_pop, tc_mixed_up_pop, tc_bound_up_pop, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_NeuronUpdate.py:81: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_NeuronUpdate.test_single_update_local _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases local_eq = Neuron( equations=""" noise = Uniform(0,1) r = t """ ) global_eq = Neuron( equations=""" noise = Uniform(0,1) : population glob_r = t : population r = t """ ) mixed_eq = Neuron( parameters="glob_par = 1.0: population", equations=""" r = t + glob_par """ ) bound_eq = Neuron( parameters=""" min_r=1.0: population max_r=3.0: population """, equations=""" r = t : min=min_r, max=max_r """ ) tc_loc_up_pop = Population(3, local_eq) tc_glob_up_pop = Population(3, global_eq) tc_mixed_up_pop = Population(3, mixed_eq) tc_bound_up_pop = Population(3, bound_eq) m = Monitor(tc_bound_up_pop, 'r') cls.test_net = Network() cls.test_net.add([tc_loc_up_pop, tc_glob_up_pop, tc_mixed_up_pop, tc_bound_up_pop, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_NeuronUpdate.py:81: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_NeuronUpdate.test_single_update_mixed _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # neuron defintions common used for test cases local_eq = Neuron( equations=""" noise = Uniform(0,1) r = t """ ) global_eq = Neuron( equations=""" noise = Uniform(0,1) : population glob_r = t : population r = t """ ) mixed_eq = Neuron( parameters="glob_par = 1.0: population", equations=""" r = t + glob_par """ ) bound_eq = Neuron( parameters=""" min_r=1.0: population max_r=3.0: population """, equations=""" r = t : min=min_r, max=max_r """ ) tc_loc_up_pop = Population(3, local_eq) tc_glob_up_pop = Population(3, global_eq) tc_mixed_up_pop = Population(3, mixed_eq) tc_bound_up_pop = Population(3, bound_eq) m = Monitor(tc_bound_up_pop, 'r') cls.test_net = Network() cls.test_net.add([tc_loc_up_pop, tc_glob_up_pop, tc_mixed_up_pop, tc_bound_up_pop, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_NeuronUpdate.py:81: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________________ ERROR at setup of test_SpikingCondition.test_v ________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron1 = Neuron( equations=""" v = v + 1.0 """, spike = "v == 3.0", reset = "v = 1.0" ) neuron2 = Neuron( parameters="Vt = 3.0", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", refractory = 3.0 ) neuron3 = Neuron( parameters="Vt = 3.0 : population", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", ) pop1 = Population(3, neuron1) pop2 = Population(3, neuron2) pop3 = Population(3, neuron3) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_SpikingNeuron.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 17 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 17 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore17.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore17.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________ ERROR at setup of test_SpikingCondition.test_v_conditioned __________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron1 = Neuron( equations=""" v = v + 1.0 """, spike = "v == 3.0", reset = "v = 1.0" ) neuron2 = Neuron( parameters="Vt = 3.0", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", refractory = 3.0 ) neuron3 = Neuron( parameters="Vt = 3.0 : population", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", ) pop1 = Population(3, neuron1) pop2 = Population(3, neuron2) pop3 = Population(3, neuron3) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_SpikingNeuron.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_SpikingCondition.test_v_ref ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron1 = Neuron( equations=""" v = v + 1.0 """, spike = "v == 3.0", reset = "v = 1.0" ) neuron2 = Neuron( parameters="Vt = 3.0", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", refractory = 3.0 ) neuron3 = Neuron( parameters="Vt = 3.0 : population", equations=""" v = v + 1.0 """, spike = "v == Vt", reset = "v = 1.0 ", ) pop1 = Population(3, neuron1) pop2 = Population(3, neuron2) pop3 = Population(3, neuron3) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Neuron/test_SpikingNeuron.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_CurrentInjection.test_compile _____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation. """ SimpleSpike = Neuron( equations="mp=g_exc", spike="mp >= 1.0", reset="" ) inp = Population(1, neuron=Neuron(equations="r=sin(t)")) out = Population(1, neuron=SimpleSpike) m = Monitor(out, "mp") proj = CurrentInjection(inp, out, 'exc') proj.connect_current() cls.test_net = Network() cls.test_net.add([inp, out, proj, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpecificProjections.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 18 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 18 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 1 ) for projection proj11 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj11 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj11 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore18.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore18.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________ ERROR at setup of test_CurrentInjection.test_run_one_loop ___________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. Adapted the example from documentation. """ SimpleSpike = Neuron( equations="mp=g_exc", spike="mp >= 1.0", reset="" ) inp = Population(1, neuron=Neuron(equations="r=sin(t)")) out = Population(1, neuron=SimpleSpike) m = Monitor(out, "mp") proj = CurrentInjection(inp, out, 'exc') proj.connect_current() cls.test_net = Network() cls.test_net.add([inp, out, proj, m]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpecificProjections.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____ ERROR at setup of test_StructuralPlasticityModel.test_invoke_compile _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test, this was an example defintion provided by the reporter. """ setup(structural_plasticity=True) value_synapse = Synapse( parameters=""" tau_utility = 1000 """, equations=""" tau_utility * dutility/dt = pre.r * post.r : init=1.0 """, creating="pre.r * post.r > 0.9 : proba = 1.0, w = 1.0", pruning="utility < 0.0 : proba = 0.5", operation="max" ) v = Population(geometry=5, neuron=LeakyIntegrator()) value_proj = Projection(pre=v, post=v, target="exc", synapse=value_synapse) value_proj.connect_fixed_number_pre(number=1, weights=1.0) # build the network cls.test_net = Network() cls.test_net.add([v, value_proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityModel.py:67: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 19 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 19 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 5 ) for projection proj12 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj12 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj12 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore19.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore19.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __ ERROR at setup of test_StructuralPlasticityModelDelay.test_invoke_compile ___ cls = @classmethod def setUpClass(cls): """ Compile the network for this test, this was an example defintion provided by the reporter. """ setup(structural_plasticity=True) value_synapse = Synapse( parameters=""" tau_utility = 1000 """, equations=""" tau_utility * dutility/dt = pre.r * post.r : init=1.0 """, creating="pre.r * post.r > 0.9 : proba = 1.0, w = 1.0", pruning="utility < 0.0 : proba = 0.5", operation="max" ) v = Population(geometry=5, neuron=LeakyIntegrator()) value_proj = Projection(pre=v, post=v, target="exc", synapse=value_synapse) value_proj.connect_fixed_number_pre(number=1, weights=1.0, delays=2.0) # build the network cls.test_net = Network() cls.test_net.add([v, value_proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityModel.py:129: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 20 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 20 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 5 ) for projection proj13 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj13 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj13 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore20.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore20.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_StructuralPlasticityEnvironment.test_create_multiple_synapses _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ setup(structural_plasticity=True) neuron = Neuron( parameters="tau = 10", equations="r += 1/tau * t" ) pop1 = Population((8), neuron) proj = Projection( pre=pop1, post=pop1, target="exc", ) proj2 = Projection( pre=pop1, post=pop1, target="exc", ) proj.connect_all_to_all(weights=1.0) proj2.connect_one_to_one(weights=1.0) cls.test_net = Network() cls.test_net.add([pop1, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityEnvironment.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 21 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 21 ... Generate code for OpenMP ... Selected LILMatrix ( 8, 8 ) for projection proj14 and single_matrix = True Selected LILMatrix ( 8, 8 ) for projection proj14 and single_matrix = True Selected LILMatrix ( 8, 8 ) for projection proj14 and single_matrix = True Selected LILMatrix ( 8, 8 ) for projection proj15 and single_matrix = True Selected LILMatrix ( 8, 8 ) for projection proj15 and single_matrix = True Selected LILMatrix ( 8, 8 ) for projection proj15 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore21.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore21.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_StructuralPlasticityEnvironment.test_create_single_synapse _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ setup(structural_plasticity=True) neuron = Neuron( parameters="tau = 10", equations="r += 1/tau * t" ) pop1 = Population((8), neuron) proj = Projection( pre=pop1, post=pop1, target="exc", ) proj2 = Projection( pre=pop1, post=pop1, target="exc", ) proj.connect_all_to_all(weights=1.0) proj2.connect_one_to_one(weights=1.0) cls.test_net = Network() cls.test_net.add([pop1, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityEnvironment.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_StructuralPlasticityEnvironment.test_prune_complete_dendrite _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ setup(structural_plasticity=True) neuron = Neuron( parameters="tau = 10", equations="r += 1/tau * t" ) pop1 = Population((8), neuron) proj = Projection( pre=pop1, post=pop1, target="exc", ) proj2 = Projection( pre=pop1, post=pop1, target="exc", ) proj.connect_all_to_all(weights=1.0) proj2.connect_one_to_one(weights=1.0) cls.test_net = Network() cls.test_net.add([pop1, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityEnvironment.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_StructuralPlasticityEnvironment.test_prune_multiple_synapses _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ setup(structural_plasticity=True) neuron = Neuron( parameters="tau = 10", equations="r += 1/tau * t" ) pop1 = Population((8), neuron) proj = Projection( pre=pop1, post=pop1, target="exc", ) proj2 = Projection( pre=pop1, post=pop1, target="exc", ) proj.connect_all_to_all(weights=1.0) proj2.connect_one_to_one(weights=1.0) cls.test_net = Network() cls.test_net.add([pop1, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityEnvironment.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_StructuralPlasticityEnvironment.test_prune_single_synapse _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ setup(structural_plasticity=True) neuron = Neuron( parameters="tau = 10", equations="r += 1/tau * t" ) pop1 = Population((8), neuron) proj = Projection( pre=pop1, post=pop1, target="exc", ) proj2 = Projection( pre=pop1, post=pop1, target="exc", ) proj.connect_all_to_all(weights=1.0) proj2.connect_one_to_one(weights=1.0) cls.test_net = Network() cls.test_net.add([pop1, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_StructuralPlasticityEnvironment.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Convolution.test_bank_of_filters ____________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 22 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 22 ... Generate code for OpenMP ... Selected LILMatrix ( 12, 12 ) for projection proj16 and single_matrix = True Selected LILMatrix ( 12, 12 ) for projection proj17 and single_matrix = True Selected LILMatrix ( 12, 12 ) for projection proj18 and single_matrix = True Selected LILMatrix ( 12, 24 ) for projection proj19 and single_matrix = True Selected LILMatrix ( 24, 24 ) for projection proj20 and single_matrix = True Selected LILMatrix ( 24, 24 ) for projection proj21 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore22.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore22.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_Convolution.test_get_post_ranks ____________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______________ ERROR at setup of test_Convolution.test_get_size _______________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _____________ ERROR at setup of test_Convolution.test_get_weights ______________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Convolution.test_layer_wise_conv ____________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________ ERROR at setup of test_Convolution.test_non_linear_conv ____________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_Convolution.test_post_max_convolution _________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Convolution.test_post_simple_convolution ________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Convolution.test_simple_bank_of_filters ________ cls = @classmethod def setUpClass(cls): neuron = Neuron( parameters="baseline = 0", equations="r = baseline" ) neuron2 = Neuron( equations=""" r = sum(exc) : init = 0.0 mr = sum(mex) : init = 0.0 pr = sum(pex) : init = 0.0 br = sum(bex) : init = 0.0 """ ) pop0 = Population((3, 4), neuron) pop1 = Population((3, 4), neuron2) pop2 = Population((3, 4, 2), neuron) pop3 = Population((3, 4, 2), neuron2) proj0 = Convolution(pre=pop0, post=pop1, target="exc") proj0.connect_filter(conv_filter) proj1 = Convolution(pre=pop0, post=pop1, target="mex", operation="max") proj1.connect_filter(conv_filter) proj2 = Convolution(pre=pop0, post=pop1, target="pex", psp="w * pre.r * pre.r") proj2.connect_filter(conv_filter) proj3 = Convolution(pre=pop2, post=pop1, target="bex") proj3.connect_filter(bo_filters[0, :, :, :]) proj4 = Convolution(pre=pop2, post=pop3, target="pex") proj4.connect_filter(conv_filter, keep_last_dimension=True) ssList = [[i, j, 0] for i in range(3) for j in range(4)] proj5 = Convolution(pre=pop2, post=pop3, target="exc") proj5.connect_filters(bo_filters, padding=0.0, subsampling=ssList) cls.test_net = Network() cls.test_net.add([pop0, pop1, pop2, pop3, proj0, proj1, proj2, proj3, proj4, proj5]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Convolution.py:90: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______________ ERROR at setup of test_Pooling.test_get_post_ranks ______________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test TODO! copy of Pooling is not possible """ # setup(structural_plasticity=False) neuron = Neuron(parameters="baseline = 0", equations="r = baseline") neuron2 = Neuron(equations="r = sum(exc) : init = 0.0") pop1 = Population((2, 3, 10), neuron) pop2 = Population((2, 3), neuron2) pop3 = Population((1, 1, 10), neuron2) proj1 = Pooling(pre=pop1, post=pop2, target="exc", operation='mean') proj1.connect_pooling(extent=(1, 1, 10)) proj2 = Pooling(pre=pop1, post=pop3, target="exc", operation='mean') proj2.connect_pooling(extent=(2, 3, 1)) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Pooling.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 23 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 23 ... Generate code for OpenMP ... Selected LILMatrix ( 6, 60 ) for projection proj22 and single_matrix = True Selected LILMatrix ( 10, 60 ) for projection proj23 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore23.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore23.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _________________ ERROR at setup of test_Pooling.test_get_size _________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test TODO! copy of Pooling is not possible """ # setup(structural_plasticity=False) neuron = Neuron(parameters="baseline = 0", equations="r = baseline") neuron2 = Neuron(equations="r = sum(exc) : init = 0.0") pop1 = Population((2, 3, 10), neuron) pop2 = Population((2, 3), neuron2) pop3 = Population((1, 1, 10), neuron2) proj1 = Pooling(pre=pop1, post=pop2, target="exc", operation='mean') proj1.connect_pooling(extent=(1, 1, 10)) proj2 = Pooling(pre=pop1, post=pop3, target="exc", operation='mean') proj2.connect_pooling(extent=(2, 3, 1)) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Pooling.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___________________ ERROR at setup of test_Pooling.test_pool ___________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test TODO! copy of Pooling is not possible """ # setup(structural_plasticity=False) neuron = Neuron(parameters="baseline = 0", equations="r = baseline") neuron2 = Neuron(equations="r = sum(exc) : init = 0.0") pop1 = Population((2, 3, 10), neuron) pop2 = Population((2, 3), neuron2) pop3 = Population((1, 1, 10), neuron2) proj1 = Pooling(pre=pop1, post=pop2, target="exc", operation='mean') proj1.connect_pooling(extent=(1, 1, 10)) proj2 = Pooling(pre=pop1, post=pop3, target="exc", operation='mean') proj2.connect_pooling(extent=(2, 3, 1)) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Pooling.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __________________ ERROR at setup of test_Pooling.test_pool2 ___________________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test TODO! copy of Pooling is not possible """ # setup(structural_plasticity=False) neuron = Neuron(parameters="baseline = 0", equations="r = baseline") neuron2 = Neuron(equations="r = sum(exc) : init = 0.0") pop1 = Population((2, 3, 10), neuron) pop2 = Population((2, 3), neuron2) pop3 = Population((1, 1, 10), neuron2) proj1 = Pooling(pre=pop1, post=pop2, target="exc", operation='mean') proj1.connect_pooling(extent=(1, 1, 10)) proj2 = Pooling(pre=pop1, post=pop3, target="exc", operation='mean') proj2.connect_pooling(extent=(2, 3, 1)) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj1, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Pooling.py:62: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError __ ERROR at setup of test_RateTransmissionAllToAll_csr_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 24 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 24 ... Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionAllToAll_csr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionAllToAll_ellr_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 25 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 25 ... WARNING: ELLPACK-R (ELLR) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionAllToAll_ellr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionAllToAll_sell_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 26 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 26 ... WARNING: Sliced ELLPACK (SELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionAllToAll_sell_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionAllToAll_dense_post_to_pre.test_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 27 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 27 ... Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionAllToAll_dense_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_all_to_all(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:125: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError __ ERROR at setup of test_RateTransmissionOneToOne_csr_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 28 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 28 ... Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionOneToOne_csr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionOneToOne_ellr_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 29 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 29 ... WARNING: ELLPACK-R (ELLR) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionOneToOne_ellr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionOneToOne_sell_post_to_pre.test_ranks __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 30 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 30 ... WARNING: Sliced ELLPACK (SELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionOneToOne_sell_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_one_to_one(weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_RateTransmissionFixedNumberPre_csr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_fixed_number_pre(3, weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:192: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 31 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 31 ... Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionFixedNumberPre_ellr_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_fixed_number_pre(3, weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:192: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 32 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 32 ... WARNING: ELLPACK-R (ELLR) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionFixedNumberPre_sell_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_fixed_number_pre(3, weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:192: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 33 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 33 ... WARNING: Sliced ELLPACK (SELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_RateTransmissionFixedNumberPre_dense_post_to_pre.test_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population((3, 3), neuron) pop2 = Population((3, 3), neuron2) proj = Projection(pre=pop1, post=pop2, target="exc") proj.connect_fixed_number_pre(3, weights=0.1, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateTransmission.py:192: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 34 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 34 ... Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityNoDelay_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 35 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 35 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 5 ) for projection proj35 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj35 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj35 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore35.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore35.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_CustomConnectivityNoDelay_lil_post_to_pre.test_no_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_CustomConnectivityNoDelay_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 36 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 36 ... Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityNoDelay_csr_post_to_pre.test_no_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_CustomConnectivityNoDelay_ell_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 37 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 37 ... WARNING: ELLPACK (ELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityNoDelay_ell_post_to_pre.test_no_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal(pre, post, weight): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [0]*len(pre_ranks)) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc") proj1.connect_with_func(method=my_diagonal, weight=0.1, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:73: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_CustomConnectivityUniformDelay_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 38 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 38 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 5 ) for projection proj38 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj38 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj38 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore38.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore38.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_CustomConnectivityUniformDelay_lil_post_to_pre.test_uniform_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_CustomConnectivityUniformDelay_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 39 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 39 ... Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityUniformDelay_csr_post_to_pre.test_uniform_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_CustomConnectivityUniformDelay_ell_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 40 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 40 ... WARNING: ELLPACK (ELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityUniformDelay_ell_post_to_pre.test_uniform_delay _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), [delay]) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc2") proj1.connect_with_func(method=my_diagonal_with_uniform_delay, weight=0.1, delay=2, storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:148: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 41 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 41 ... Generate code for OpenMP ... Selected LILMatrix ( 8, 5 ) for projection proj41 and single_matrix = True Selected LILMatrix ( 8, 5 ) for projection proj41 and single_matrix = True Selected LILMatrix ( 8, 5 ) for projection proj41 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore41.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore41.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_none ____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteDefaultSynapse_lil_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 42 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 42 ... Generate code for OpenMP ... _ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ___ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_none ____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_csr_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 43 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 43 ... WARNING: ELLPACK (ELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ___ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_none ____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_ell_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 44 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 44 ... Generate code for OpenMP ... _ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError __ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_none ___ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteDefaultSynapse_dense_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc" ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order, force_multiple_weights=True) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:72: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 45 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 45 ... Generate code for OpenMP ... Selected LILMatrix ( 8, 5 ) for projection proj45 and single_matrix = True Selected LILMatrix ( 8, 5 ) for projection proj45 and single_matrix = True Selected LILMatrix ( 8, 5 ) for projection proj45 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore45.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore45.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_get_by_name _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_get_dendrite_alpha _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_get_dendrite_tau _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ___ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_none ___ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_alpha _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_alpha_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_tau __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_tau_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_lil_post_to_pre.test_set_with_dict _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_dendrite_size _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 46 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 46 ... Generate code for OpenMP ... _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_get_by_name _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_get_dendrite_alpha _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_get_dendrite_tau _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_get_dendrite_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ___ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_none ___ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_pre_ranks _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_alpha _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_alpha_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_tau __ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_tau_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_weights _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_weights_2 _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_DendriteModifiedSynapse_csr_post_to_pre.test_set_with_dict _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters = "tau = 10", equations="r += 1/tau * t" ) neuron2 = Neuron( parameters = "tau = 10: population", equations="r += 1/tau * t: init = 1.0" ) Oja = Synapse( parameters=""" tau = 5000.0 : postsynaptic alpha = 8.0 """, equations = """ tau * dw/dt = pre.r * post.r - alpha * post.r^2 * w """ ) pop1 = Population(5, neuron) pop2 = Population(8, neuron2) proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_all_to_all(weights = 1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Dendrite.py:190: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _______ ERROR at setup of test_Projection_lil_post_to_pre.test_get_alpha _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 47 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 47 ... Generate code for OpenMP ... Selected LILMatrix ( 4, 8 ) for projection proj47 and single_matrix = True Selected LILMatrix ( 4, 8 ) for projection proj47 and single_matrix = True Selected LILMatrix ( 4, 8 ) for projection proj47 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore47.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore47.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ______ ERROR at setup of test_Projection_lil_post_to_pre.test_get_alpha_2 ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____ ERROR at setup of test_Projection_lil_post_to_pre.test_get_dendrite_w _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ____ ERROR at setup of test_Projection_lil_post_to_pre.test_get_post_ranks _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Projection_lil_post_to_pre.test_get_size ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_Projection_lil_post_to_pre.test_get_tau ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Projection_lil_post_to_pre.test_get_tau_2 _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _________ ERROR at setup of test_Projection_lil_post_to_pre.test_get_w _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _______ ERROR at setup of test_Projection_csr_post_to_pre.test_get_alpha _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 48 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 48 ... Generate code for OpenMP ... ______ ERROR at setup of test_Projection_csr_post_to_pre.test_get_alpha_2 ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ____ ERROR at setup of test_Projection_csr_post_to_pre.test_get_dendrite_w _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ____ ERROR at setup of test_Projection_csr_post_to_pre.test_get_post_ranks _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _______ ERROR at setup of test_Projection_csr_post_to_pre.test_get_size ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ________ ERROR at setup of test_Projection_csr_post_to_pre.test_get_tau ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _______ ERROR at setup of test_Projection_csr_post_to_pre.test_get_tau_2 _______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _________ ERROR at setup of test_Projection_csr_post_to_pre.test_get_w _________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple = Neuron( parameters = "r=0", ) Oja = Synapse( parameters=""" tau = 5000.0 alpha = 8.0 : postsynaptic """, equations = """ dw/dt = -w """ ) pop1 = Population((8), neuron=simple) pop2 = Population((4), neuron=simple) # define a sparse matrix weight_matrix = sparse.lil_matrix((4,8)) # HD (01.07.20): its not possible to use slicing here, as it produces # FutureWarnings in scipy/numpy (for version >= 1.17) for i in range(8): weight_matrix[1, i] = 0.2 for i in range(2,6): weight_matrix[3, i] = 0.5 # we need to flip the matrix (see 2.9.3.2 in documentation) cls.weight_matrix = weight_matrix.T # set the pre-defined matrix proj = Projection( pre = pop1, post = pop2, target = "exc", synapse = Oja ) proj.connect_from_sparse(cls.weight_matrix, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_Projection.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ________ ERROR at setup of test_NoDelay_lil_post_to_pre.test_all_to_all ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 58 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 58 ... Generate code for OpenMP ... Selected LILMatrix ( 289, 289 ) for projection proj61 and single_matrix = True Selected LILMatrix ( 289, 289 ) for projection proj61 and single_matrix = True Selected LILMatrix ( 289, 289 ) for projection proj61 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj62 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj62 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj62 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj63 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj63 and single_matrix = True Selected LILMatrix ( 4, 289 ) for projection proj63 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore58.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore58.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _____ ERROR at setup of test_NoDelay_lil_post_to_pre.test_fixed_number_pre _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_NoDelay_lil_post_to_pre.test_one_to_one ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ________ ERROR at setup of test_NoDelay_csr_post_to_pre.test_all_to_all ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 59 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 59 ... Generate code for OpenMP ... _____ ERROR at setup of test_NoDelay_csr_post_to_pre.test_fixed_number_pre _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ________ ERROR at setup of test_NoDelay_csr_post_to_pre.test_one_to_one ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ________ ERROR at setup of test_NoDelay_ell_post_to_pre.test_all_to_all ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 60 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 60 ... WARNING: ELLPACK (ELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _____ ERROR at setup of test_NoDelay_ell_post_to_pre.test_fixed_number_pre _____ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ________ ERROR at setup of test_NoDelay_ell_post_to_pre.test_one_to_one ________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters="r=0.0" ) out1 = Neuron( equations=""" r = sum(one2one) """ ) out2 = Neuron( equations=""" r = sum(all2all) + sum(fnp) """ ) pop1 = Population((17, 17), neuron) pop2 = Population((17, 17), out1) pop3 = Population(4, out2) proj = Projection(pre=pop1, post=pop2, target="one2one") proj.connect_one_to_one(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pre=pop1, post=pop3, target="all2all") proj2.connect_all_to_all(weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pre=pop1, post=pop3, target="fnp") proj3.connect_fixed_number_pre(5, weights=Uniform(0,1), storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, pop3, proj, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:85: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ______ ERROR at setup of test_SynapseOperations_lil_post_to_pre.test_max _______ cls = @classmethod def setUpClass(cls): """ Define and compile the network for this test. """ input_neuron = Neuron( parameters="r=0.0" ) output_neuron = Neuron( equations=""" r = sum(p1) + sum(p2) """ ) syn_max = Synapse( psp="pre.r * w", operation="max" ) syn_min = Synapse( psp="pre.r * w", operation="min" ) syn_mean = Synapse( psp="pre.r * w", operation="mean" ) pop1 = Population((3, 3), neuron=input_neuron) pop2 = Population(4, neuron=output_neuron) proj1 = Projection(pop1, pop2, target="p1", synapse=syn_max) proj1.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pop1, pop2, target="p2", synapse=syn_min) proj2.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pop1, pop2, target="p3", synapse=syn_mean) proj3.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:440: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 61 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 61 ... Generate code for OpenMP ... Selected LILMatrix ( 4, 9 ) for projection proj70 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj70 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj70 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj71 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj71 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj71 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj72 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj72 and single_matrix = True Selected LILMatrix ( 4, 9 ) for projection proj72 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore61.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore61.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ______ ERROR at setup of test_SynapseOperations_lil_post_to_pre.test_mean ______ cls = @classmethod def setUpClass(cls): """ Define and compile the network for this test. """ input_neuron = Neuron( parameters="r=0.0" ) output_neuron = Neuron( equations=""" r = sum(p1) + sum(p2) """ ) syn_max = Synapse( psp="pre.r * w", operation="max" ) syn_min = Synapse( psp="pre.r * w", operation="min" ) syn_mean = Synapse( psp="pre.r * w", operation="mean" ) pop1 = Population((3, 3), neuron=input_neuron) pop2 = Population(4, neuron=output_neuron) proj1 = Projection(pop1, pop2, target="p1", synapse=syn_max) proj1.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pop1, pop2, target="p2", synapse=syn_min) proj2.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pop1, pop2, target="p3", synapse=syn_mean) proj3.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:440: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_SynapseOperations_lil_post_to_pre.test_min _______ cls = @classmethod def setUpClass(cls): """ Define and compile the network for this test. """ input_neuron = Neuron( parameters="r=0.0" ) output_neuron = Neuron( equations=""" r = sum(p1) + sum(p2) """ ) syn_max = Synapse( psp="pre.r * w", operation="max" ) syn_min = Synapse( psp="pre.r * w", operation="min" ) syn_mean = Synapse( psp="pre.r * w", operation="mean" ) pop1 = Population((3, 3), neuron=input_neuron) pop2 = Population(4, neuron=output_neuron) proj1 = Projection(pop1, pop2, target="p1", synapse=syn_max) proj1.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj2 = Projection(pop1, pop2, target="p2", synapse=syn_min) proj2.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) proj3 = Projection(pop1, pop2, target="p3", synapse=syn_mean) proj3.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1, proj2, proj3]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:440: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_SynapticAccess_lil_post_to_pre.test_compile ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """ ) cov = Synapse( parameters=""" tau = 5000.0 """, equations=""" tau * dw/dt = (pre.r - mean(pre.r) ) * (post.r - mean(post.r) ) """ ) pre = Population(6, neuron) post = Population(1, neuron) proj = Projection(pre, post, "exc", synapse = cov) proj.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pre, post, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:539: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 62 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 62 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 6 ) for projection proj73 and single_matrix = True Selected LILMatrix ( 1, 6 ) for projection proj73 and single_matrix = True Selected LILMatrix ( 1, 6 ) for projection proj73 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore62.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore62.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ______ ERROR at setup of test_SynapticAccess_csr_post_to_pre.test_compile ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ neuron = Neuron( parameters=""" r=0 """ ) cov = Synapse( parameters=""" tau = 5000.0 """, equations=""" tau * dw/dt = (pre.r - mean(pre.r) ) * (post.r - mean(post.r) ) """ ) pre = Population(6, neuron) post = Population(1, neuron) proj = Projection(pre, post, "exc", synapse = cov) proj.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pre, post, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:539: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 63 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 63 ... Generate code for OpenMP ... _ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_configured_delay_global _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 64 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 64 ... Generate code for OpenMP ... Selected LILMatrix ( 3, 3 ) for projection proj75 and single_matrix = True Selected LILMatrix ( 3, 3 ) for projection proj75 and single_matrix = True Selected LILMatrix ( 3, 3 ) for projection proj75 and single_matrix = True Selected LILMatrix ( 3, 3 ) for projection proj76 and single_matrix = True Selected LILMatrix ( 3, 3 ) for projection proj76 and single_matrix = True Selected LILMatrix ( 3, 3 ) for projection proj76 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore64.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore64.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_configured_delay_local _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_get_delay ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_modified_delay_global _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_modified_delay_local _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ______ ERROR at setup of test_UniformDelay_lil_post_to_pre.test_set_delay ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError _ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_configured_delay_global _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 65 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 65 ... Generate code for OpenMP ... _ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_configured_delay_local _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ______ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_get_delay ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_modified_delay_global _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError _ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_modified_delay_local _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ______ ERROR at setup of test_UniformDelay_csr_post_to_pre.test_set_delay ______ cls = @classmethod def setUpClass(cls): """ Compile the network for this test. The input_neuron will generate a sequence of values: r_t = [-1, 0, 2, 5, 9, 14, 20, ...] one time as global (glob_r) and one time as local variable (r). """ input_neuron = Neuron( equations=""" glob_r = glob_r + t : init = -1, population r = r + t : init = -1 """ ) neuron2 = Neuron( equations=""" r = sum(ff) """ ) synapse_glob = Synapse(psp="pre.glob_r * w") pop1 = Population((3), input_neuron) pop2 = Population((3), neuron2) # A projection with uniform delay proj = Projection(pre=pop1, post=pop2, target="ff") proj.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # A projection with uniform delay proj2 = Projection(pre=pop1, post=pop2, target="ff_glob", synapse=synapse_glob) proj2.connect_one_to_one(weights=1.0, delays=10.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Build up network cls.test_net = Network() cls.test_net.add([pop1, pop2, proj, proj2]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateDelays.py:205: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ____________ ERROR at setup of test_PreSpike_lil_post_to_pre.test_w ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # Each time step emit an event SpkNeuron = Neuron( parameters = "v = 1", equations = "mp = g_exc", spike = "v > 0" ) pop = Population(3, neuron=SpkNeuron) # decrease weight until zero. BoundedSynapse = Synapse( parameters="g = 1.0", pre_spike=""" w -= 1.0 : min=0.0 """, psp="g" ) proj = Projection( pop, pop, "exc", synapse = BoundedSynapse) proj.connect_all_to_all(5.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 66 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 66 ... Generate code for OpenMP ... Selected LILInvMatrix ( 3, 3 ) for projection proj79 and single_matrix = True Selected LILInvMatrix ( 3, 3 ) for projection proj79 and single_matrix = True Selected LILInvMatrix ( 3, 3 ) for projection proj79 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore66.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore66.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ____________ ERROR at setup of test_PreSpike_csr_post_to_pre.test_w ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # Each time step emit an event SpkNeuron = Neuron( parameters = "v = 1", equations = "mp = g_exc", spike = "v > 0" ) pop = Population(3, neuron=SpkNeuron) # decrease weight until zero. BoundedSynapse = Synapse( parameters="g = 1.0", pre_spike=""" w -= 1.0 : min=0.0 """, psp="g" ) proj = Projection( pop, pop, "exc", synapse = BoundedSynapse) proj.connect_all_to_all(5.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:59: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 67 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 67 ... Generate code for OpenMP ... ___________ ERROR at setup of test_PostSpike_lil_post_to_pre.test_w ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # Each time step emit an event SpkNeuron = Neuron( parameters = "v = 1", equations = "mp = g_exc", spike = "v > 0" ) pop = Population(3, neuron=SpkNeuron) # increase weight towards a limit BoundedSynapse = Synapse( parameters=""" constant = 1.0 """, post_spike=""" w += 1.0 * constant : max=10.0 """ ) pop = Population(3, neuron=SpkNeuron) proj = Projection( pop, pop, "exc", synapse = BoundedSynapse) proj.connect_all_to_all(5.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:118: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 68 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 68 ... Generate code for OpenMP ... Selected LILInvMatrix ( 3, 3 ) for projection proj81 and single_matrix = True Selected LILInvMatrix ( 3, 3 ) for projection proj81 and single_matrix = True Selected LILInvMatrix ( 3, 3 ) for projection proj81 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore68.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore68.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ___________ ERROR at setup of test_PostSpike_csr_post_to_pre.test_w ____________ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ # Each time step emit an event SpkNeuron = Neuron( parameters = "v = 1", equations = "mp = g_exc", spike = "v > 0" ) pop = Population(3, neuron=SpkNeuron) # increase weight towards a limit BoundedSynapse = Synapse( parameters=""" constant = 1.0 """, post_spike=""" w += 1.0 * constant : max=10.0 """ ) pop = Population(3, neuron=SpkNeuron) proj = Projection( pop, pop, "exc", synapse = BoundedSynapse) proj.connect_all_to_all(5.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:118: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 69 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 69 ... Generate code for OpenMP ... _ ERROR at setup of test_TimeDependentUpdate_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): STDP = Synapse( parameters = """ tau_pre = 10.0 : projection tau_post = 10.0 : projection cApre = 0.01 : projection cApost = 0.0105 : projection wmax = 0.01 : projection """, pre_spike = """ g_target += w w = clip(w - cApost * exp((t_post - t)/tau_post) , 0.0 , wmax) """, post_spike = """ w = clip(w + cApre * exp((t_pre - t)/tau_pre) , 0.0 , wmax) """ ) pop = Population(100, Izhikevich) proj = Projection(pop, pop, 'exc', STDP) proj.connect_all_to_all(Uniform(-1.0, 1.0), storage_format=cls.storage_format,storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:177: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 70 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 70 ... Generate code for OpenMP ... Selected LILInvMatrix ( 100, 100 ) for projection proj83 and single_matrix = True Selected LILInvMatrix ( 100, 100 ) for projection proj83 and single_matrix = True Selected LILInvMatrix ( 100, 100 ) for projection proj83 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore70.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore70.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_TimeDependentUpdate_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): STDP = Synapse( parameters = """ tau_pre = 10.0 : projection tau_post = 10.0 : projection cApre = 0.01 : projection cApost = 0.0105 : projection wmax = 0.01 : projection """, pre_spike = """ g_target += w w = clip(w - cApost * exp((t_post - t)/tau_post) , 0.0 , wmax) """, post_spike = """ w = clip(w + cApre * exp((t_pre - t)/tau_pre) , 0.0 , wmax) """ ) pop = Population(100, Izhikevich) proj = Projection(pop, pop, 'exc', STDP) proj.connect_all_to_all(Uniform(-1.0, 1.0), storage_format=cls.storage_format,storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingSynapse.py:177: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 71 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 71 ... Generate code for OpenMP ... _ ERROR at setup of test_SpikeTransmissionNoDelay_lil_post_to_pre.test_non_delay _ cls = @classmethod def setUpClass(cls): """ Build up the network """ simple_emit = Neuron( spike = "t==1", ) simple_recv = Neuron( equations = """ g_exc = 0 """, spike = "g_exc>30" ) # simple in/out populations in_pop = Population(5, neuron=simple_emit) out_pop = Population(2, neuron=simple_recv) # create the projections for the test cases (TC) # TC: no delay proj = Projection(pre=in_pop, post=out_pop, target="exc") proj.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Monitor to record the currents m = Monitor(out_pop, ["g_exc"]) # build network and store required object # instances net = Network() net.add([in_pop, out_pop, proj, m]) cls.test_net = net > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingTransmission.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 72 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 72 ... Generate code for OpenMP ... Selected LILInvMatrix ( 2, 5 ) for projection proj85 and single_matrix = True Selected LILInvMatrix ( 2, 5 ) for projection proj85 and single_matrix = True Selected LILInvMatrix ( 2, 5 ) for projection proj85 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore72.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore72.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_SpikeTransmissionNoDelay_csr_post_to_pre.test_non_delay _ cls = @classmethod def setUpClass(cls): """ Build up the network """ simple_emit = Neuron( spike = "t==1", ) simple_recv = Neuron( equations = """ g_exc = 0 """, spike = "g_exc>30" ) # simple in/out populations in_pop = Population(5, neuron=simple_emit) out_pop = Population(2, neuron=simple_recv) # create the projections for the test cases (TC) # TC: no delay proj = Projection(pre=in_pop, post=out_pop, target="exc") proj.connect_all_to_all(weights=1.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Monitor to record the currents m = Monitor(out_pop, ["g_exc"]) # build network and store required object # instances net = Network() net.add([in_pop, out_pop, proj, m]) cls.test_net = net > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingTransmission.py:65: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 73 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 73 ... Generate code for OpenMP ... _ ERROR at setup of test_SpikeTransmissionUniformDelay_lil_post_to_pre.test_uniform_delay _ cls = @classmethod def setUpClass(cls): """ Build up the network """ simple_emit = Neuron( spike = "t==1", ) simple_recv = Neuron( equations = """ g_exc = 0 """, spike = "g_exc>30" ) # simple in/out populations in_pop = Population(5, neuron=simple_emit) out_pop = Population(2, neuron=simple_recv) # TC: uniform delay proj = Projection(pre=in_pop, post=out_pop, target="exc") proj.connect_all_to_all(weights=1.0, delays=3.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Monitor to record the currents m = Monitor(out_pop, ["g_exc"]) # build network and store required object # instances net = Network() net.add([in_pop, out_pop, proj, m]) cls.test_net = net > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingTransmission.py:136: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 74 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 74 ... Generate code for OpenMP ... Selected LILInvMatrix ( 2, 5 ) for projection proj87 and single_matrix = True Selected LILInvMatrix ( 2, 5 ) for projection proj87 and single_matrix = True Selected LILInvMatrix ( 2, 5 ) for projection proj87 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore74.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore74.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_SpikeTransmissionUniformDelay_csr_post_to_pre.test_uniform_delay _ cls = @classmethod def setUpClass(cls): """ Build up the network """ simple_emit = Neuron( spike = "t==1", ) simple_recv = Neuron( equations = """ g_exc = 0 """, spike = "g_exc>30" ) # simple in/out populations in_pop = Population(5, neuron=simple_emit) out_pop = Population(2, neuron=simple_recv) # TC: uniform delay proj = Projection(pre=in_pop, post=out_pop, target="exc") proj.connect_all_to_all(weights=1.0, delays=3.0, storage_format=cls.storage_format, storage_order=cls.storage_order) # Monitor to record the currents m = Monitor(out_pop, ["g_exc"]) # build network and store required object # instances net = Network() net.add([in_pop, out_pop, proj, m]) cls.test_net = net > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingTransmission.py:136: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 75 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 75 ... Generate code for OpenMP ... _ ERROR at setup of test_RateCodedContinuousUpdate_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple_neuron = Neuron( parameters="r=1.0" ) eq_set = Synapse( equations=""" glob_var = 0.1 : projection semi_glob_var = 0.2 : postsynaptic w = t + glob_var + semi_glob_var """ ) pop0 = Population(3, simple_neuron) pop1 = Population(1, simple_neuron) proj = Projection(pop0, pop1, "exc", eq_set) proj.connect_all_to_all(weights=0.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop0, pop1, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_ContinuousUpdate.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 76 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 76 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 3 ) for projection proj89 and single_matrix = True Selected LILMatrix ( 1, 3 ) for projection proj89 and single_matrix = True Selected LILMatrix ( 1, 3 ) for projection proj89 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore76.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore76.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_RateCodedContinuousUpdate_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple_neuron = Neuron( parameters="r=1.0" ) eq_set = Synapse( equations=""" glob_var = 0.1 : projection semi_glob_var = 0.2 : postsynaptic w = t + glob_var + semi_glob_var """ ) pop0 = Population(3, simple_neuron) pop1 = Population(1, simple_neuron) proj = Projection(pop0, pop1, "exc", eq_set) proj.connect_all_to_all(weights=0.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop0, pop1, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_ContinuousUpdate.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 77 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 77 ... Generate code for OpenMP ... _ ERROR at setup of test_RateCodedContinuousUpdate_dense_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple_neuron = Neuron( parameters="r=1.0" ) eq_set = Synapse( equations=""" glob_var = 0.1 : projection semi_glob_var = 0.2 : postsynaptic w = t + glob_var + semi_glob_var """ ) pop0 = Population(3, simple_neuron) pop1 = Population(1, simple_neuron) proj = Projection(pop0, pop1, "exc", eq_set) proj.connect_all_to_all(weights=0.0, storage_format=cls.storage_format, storage_order=cls.storage_order) cls.test_net = Network() cls.test_net.add([pop0, pop1, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_ContinuousUpdate.py:56: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 78 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 78 ... Generate code for OpenMP ... _ ERROR at setup of test_SpikingContinuousUpdate_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple_pre_neuron = Neuron( equations="mp=t", spike="(modulo(t,3))" ) simple_post_neuron = Neuron( equations="mp=t", spike="(modulo(t,5))" ) eq_set = Synapse( pre_spike="pre_trace=pre.mp : init=0.0", post_spike="post_trace=post.mp : init=0.0", equations=""" post_trace = post_trace -1 : min=0.0 pre_trace = pre_trace -1 : min=0.0 w = post_trace + pre_trace """ ) pop0 = Population(1, simple_pre_neuron) pop1 = Population(1, simple_post_neuron) proj = Projection(pop0, pop1, "exc", eq_set) proj.connect_all_to_all( weights=0.0, storage_format=cls.storage_format, storage_order=cls.storage_order ) cls.test_net = Network() cls.test_net.add([pop0, pop1, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_ContinuousUpdate.py:109: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 79 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 79 ... Generate code for OpenMP ... Selected LILInvMatrix ( 1, 1 ) for projection proj92 and single_matrix = True Selected LILInvMatrix ( 1, 1 ) for projection proj92 and single_matrix = True Selected LILInvMatrix ( 1, 1 ) for projection proj92 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore79.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore79.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_SpikingContinuousUpdate_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ simple_pre_neuron = Neuron( equations="mp=t", spike="(modulo(t,3))" ) simple_post_neuron = Neuron( equations="mp=t", spike="(modulo(t,5))" ) eq_set = Synapse( pre_spike="pre_trace=pre.mp : init=0.0", post_spike="post_trace=post.mp : init=0.0", equations=""" post_trace = post_trace -1 : min=0.0 pre_trace = pre_trace -1 : min=0.0 w = post_trace + pre_trace """ ) pop0 = Population(1, simple_pre_neuron) pop1 = Population(1, simple_post_neuron) proj = Projection(pop0, pop1, "exc", eq_set) proj.connect_all_to_all( weights=0.0, storage_format=cls.storage_format, storage_order=cls.storage_order ) cls.test_net = Network() cls.test_net.add([pop0, pop1, proj]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_ContinuousUpdate.py:109: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 80 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 80 ... Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityNonUniformDelay_lil_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_non_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), delay.get_values(len(pre_ranks))) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc3") proj1.connect_with_func(method=my_diagonal_with_non_uniform_delay, weight=0.1, delay=DiscreteUniform(1,5), storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:224: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 81 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 81 ... Generate code for OpenMP ... Selected LILMatrix ( 5, 5 ) for projection proj94 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj94 and single_matrix = True Selected LILMatrix ( 5, 5 ) for projection proj94 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore81.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore81.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _ ERROR at setup of test_CustomConnectivityNonUniformDelay_csr_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_non_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), delay.get_values(len(pre_ranks))) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc3") proj1.connect_with_func(method=my_diagonal_with_non_uniform_delay, weight=0.1, delay=DiscreteUniform(1,5), storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:224: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 82 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 82 ... Generate code for OpenMP ... _ ERROR at setup of test_CustomConnectivityNonUniformDelay_ell_post_to_pre.test_invoke_compile _ cls = @classmethod def setUpClass(cls): """ Compile the network for this test """ def my_diagonal_with_non_uniform_delay(pre, post, weight, delay): synapses = CSR() for post_rk in post.ranks: pre_ranks = [] if post_rk-1 in pre.ranks: pre_ranks.append(post_rk-1) if post_rk in pre.ranks: pre_ranks.append(post_rk) if post_rk+1 in pre.ranks: pre_ranks.append(post_rk+1) synapses.add(post_rk, pre_ranks, [weight]*len(pre_ranks), delay.get_values(len(pre_ranks))) return synapses neuron = Neuron( equations="r = 1" ) neuron2 = Neuron( equations="r = sum(exc)" ) pop1 = Population(5, neuron) pop2 = Population(5, neuron2) proj1 = Projection(pre=pop1, post=pop2, target="exc3") proj1.connect_with_func(method=my_diagonal_with_non_uniform_delay, weight=0.1, delay=DiscreteUniform(1,5), storage_format=cls.storage_format) cls.test_net = Network() cls.test_net.add([pop1, pop2, proj1]) > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateCustomConnectivity.py:224: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 83 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 83 ... WARNING: ELLPACK (ELL) representation is an experimental feature, we greatly appreciate bug reports. Generate code for OpenMP ... _ ERROR at setup of test_SpikeTransmissionNonUniformDelay_lil_post_to_pre.test_nonuniform_delay _ cls = @classmethod def setUpClass(cls): """ Build up the network """ simple_emit = Neuron( spike = "t==1", ) simple_recv = Neuron( equations = """ g_exc = 0 """, spike = "g_exc>30" ) # simple in/out populations in_pop = Population(5, neuron=simple_emit) out_pop = Population(2, neuron=simple_recv) # TC: non-uniform delay proj = Projection(pre=in_pop, post=out_pop, target="exc") proj.connect_all_to_all(weights=1.0, delays=DiscreteUniform(2,10), storage_format=cls.storage_format, storage_order=cls.storage_order) # Monitor to record the currents m = Monitor(out_pop, ["g_exc"]) # build network and store required object # instances net = Network() net.add([in_pop, out_pop, proj, m]) cls.test_net = net > cls.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_SpikingTransmission.py:209: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 84 WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 84 ... Generate code for OpenMP ... Selected LILInvMatrix ( 2, 5 ) for projection proj97 and single_matrix = True WARNING: Variable delays for spiking networks is experimental and slow... Selected LILInvMatrix ( 2, 5 ) for projection proj97 and single_matrix = True Selected LILInvMatrix ( 2, 5 ) for projection proj97 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore84.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore84.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ---------------------------- Captured stderr setup ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 =================================== FAILURES =================================== ________________________ test_Precision.test_precision _________________________ self = def setUp(self): > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Common/test_NumericalMethod.py:393: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 2 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 2 ... Generate code for OpenMP ... OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore2.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore2.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ----------------------------- Captured stderr call ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________________ test_Locality_lil_post_to_pre.test_compile __________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 49 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 49 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 3 ) for projection proj49 and single_matrix = True Selected LILMatrix ( 1, 3 ) for projection proj49 and single_matrix = True Selected LILMatrix ( 1, 3 ) for projection proj49 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore49.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore49.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ----------------------------- Captured stderr call ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 __________________ test_Locality_csr_post_to_pre.test_compile __________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 50 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 50 ... Generate code for OpenMP ... _________________ test_Locality_dense_post_to_pre.test_compile _________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:63: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 51 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 51 ... Generate code for OpenMP ... _________________ test_AccessPSP_lil_post_to_pre.test_compile __________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 52 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 52 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 1 ) for projection proj52 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj52 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj52 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj53 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj53 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj53 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore52.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore52.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ----------------------------- Captured stderr call ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 _________________ test_AccessPSP_csr_post_to_pre.test_compile __________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 53 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 53 ... Generate code for OpenMP ... ________________ test_AccessPSP_dense_post_to_pre.test_compile _________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:117: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 54 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 54 ... Generate code for OpenMP ... ________________ test_ModifiedPSP_lil_post_to_pre.test_compile _________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:395: in generate self.compilation() _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = def compilation(self): """ Create ANNarchyCore.so and py extensions if something has changed. """ # STDOUT if not self.silent: if get_global_config('verbose'): msg = 'Compiling with ' + self.compiler + ' ' + self.compiler_flags else: msg = 'Compiling ' if self.net_id > 0: msg += 'network ' + str(self.net_id) msg += '...' Messages._print(msg, end=" ", flush=True) if get_global_config('show_time') or Profiler().enabled: t0 = time.time() # Switch to the build directory cwd = os.getcwd() os.chdir(self.annarchy_dir + '/build/net'+ str(self.net_id)) # Start the compilation verbose = "> compile_stdout.log 2> compile_stderr.log" if not get_global_config('verbose') else "" # Start the compilation process make_process = subprocess.Popen("make all -j4" + verbose, shell=True) # Check for errors if make_process.wait() != 0: > with open('compile_stderr.log', 'r') as rfile: E FileNotFoundError: [Errno 2] No such file or directory: 'compile_stderr.log' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:497: FileNotFoundError ---------------------------- Captured stdout setup ----------------------------- Added network 55 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 55 ... Generate code for OpenMP ... Selected LILMatrix ( 1, 1 ) for projection proj58 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj58 and single_matrix = True Selected LILMatrix ( 1, 1 ) for projection proj58 and single_matrix = True OK /usr/bin/cython -3 --cplus -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ -D ANNarchyCore55.pyx g++ -O3 -march=native -D_DISABLE_PARALLEL_RNG -std=c++14 -fPIC -shared -fopenmp \ *.cpp -o ANNarchyCore55.so \ `/usr/bin/python3.13-config --includes` -I/usr/lib64/python3.13/site-packages/numpy/core/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/include -I/builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/thirdparty \ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/cython_ext/ -I /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ \ -lpython3.13 \ -L/usr/lib ----------------------------- Captured stderr call ----------------------------- g++: error: ‘-march=native’: ISA string must begin with rv32 or rv64 make: *** [Makefile:4: all] Error 1 ________________ test_ModifiedPSP_csr_post_to_pre.test_compile _________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 56 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 56 ... Generate code for OpenMP ... _______________ test_ModifiedPSP_dense_post_to_pre.test_compile ________________ self = def test_compile(self): """ Tests if the network description is compilable. """ > self.test_net.compile(silent=True) /builddir/build/BUILD/python-annarchy-4.8.1-build/ANNarchy-4.8.1/tests/Synapse/test_RateSynapse.py:163: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/core/Network.py:364: in compile Compiler.compile(directory=directory, clean=clean, silent=silent, debug_build=debug_build, add_sources=add_sources, extra_libs=extra_libs, compiler=compiler, compiler_flags=compiler_flags, cuda_config=cuda_config, annarchy_json=annarchy_json, profile_enabled=profile_enabled, net_id=self.id) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:223: in compile compiler.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:377: in generate self.code_generation() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:664: in code_generation generator.generate() /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/CodeGenerator.py:141: in generate self._proj_desc.append(self._projgen.header_struct(proj, self._annarchy_dir)) /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/OpenMPGenerator.py:54: in header_struct sparse_matrix_include, sparse_matrix_format, sparse_matrix_args, single_matrix = self._select_sparse_matrix_format(proj) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = proj = def _select_sparse_matrix_format(self, proj): """ The sparse matrix format determines the fundamental structure for connectivity representation. It depends on the model type as well as hardware paradigm. Returns (str1, str2, bool): * str1: sparse matrix format declaration * str2: sparse matrix format arguments if needed (e. g. sizes) * bool: if the matrix is a complete (True) or sliced matrix (False) """ if get_global_config('structural_plasticity') and proj._storage_format != "lil": > raise Global.InvalidConfiguration("Structural plasticity is only allowed for LIL format.") E AttributeError: module 'ANNarchy.core.Global' has no attribute 'InvalidConfiguration' /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Projection/ProjectionGenerator.py:90: AttributeError ---------------------------- Captured stdout setup ----------------------------- Added network 57 ----------------------------- Captured stdout call ----------------------------- WARNING: unrecognized command-line arguments: ['tests/test_openmp.py'] Create subdirectory. Code generation 57 ... Generate code for OpenMP ... =============================== warnings summary =============================== tests/test_openmp.py::test_ITE::test_works /builddir/build/BUILD/python-annarchy-4.8.1-build/BUILDROOT/usr/lib64/python3.13/site-packages/ANNarchy/generator/Compiler.py:168: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import parse_version -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =========================== short test summary info ============================ FAILED tests/test_openmp.py::test_Precision::test_precision - FileNotFoundErr... FAILED tests/test_openmp.py::test_Locality_lil_post_to_pre::test_compile - Fi... FAILED tests/test_openmp.py::test_Locality_csr_post_to_pre::test_compile - At... FAILED tests/test_openmp.py::test_Locality_dense_post_to_pre::test_compile - ... FAILED tests/test_openmp.py::test_AccessPSP_lil_post_to_pre::test_compile - F... FAILED tests/test_openmp.py::test_AccessPSP_csr_post_to_pre::test_compile - A... FAILED tests/test_openmp.py::test_AccessPSP_dense_post_to_pre::test_compile FAILED tests/test_openmp.py::test_ModifiedPSP_lil_post_to_pre::test_compile FAILED tests/test_openmp.py::test_ModifiedPSP_csr_post_to_pre::test_compile FAILED tests/test_openmp.py::test_ModifiedPSP_dense_post_to_pre::test_compile ERROR tests/test_openmp.py::test_ITE::test_works - FileNotFoundError: [Errno ... ERROR tests/test_openmp.py::test_BuiltinFunctions::test_clip_above - FileNotF... ERROR tests/test_openmp.py::test_BuiltinFunctions::test_clip_below - FileNotF... ERROR tests/test_openmp.py::test_BuiltinFunctions::test_clip_within - FileNot... ERROR tests/test_openmp.py::test_BuiltinFunctions::test_integer_power - FileN... ERROR tests/test_openmp.py::test_BuiltinFunctions::test_modulo - FileNotFound... ERROR tests/test_openmp.py::test_IO_Rate::test_parameters_save_and_load - Fil... ERROR tests/test_openmp.py::test_IO_Rate::test_projection_save_and_load - Fil... ERROR tests/test_openmp.py::test_IO_Rate::test_save_and_load - FileNotFoundEr... ERROR tests/test_openmp.py::test_IO_Rate::test_save_mat - FileNotFoundError: ... ERROR tests/test_openmp.py::test_IO_Spiking::test_parameters_save_and_load - ... ERROR tests/test_openmp.py::test_IO_Spiking::test_projection_save_and_load - ... ERROR tests/test_openmp.py::test_IO_Spiking::test_save_and_load - FileNotFoun... ERROR tests/test_openmp.py::test_IO_Spiking::test_save_mat - FileNotFoundErro... ERROR tests/test_openmp.py::test_Record::test_a_pauserec - FileNotFoundError:... ERROR tests/test_openmp.py::test_Record::test_popview - FileNotFoundError: [E... ERROR tests/test_openmp.py::test_Record::test_popview2 - FileNotFoundError: [... ERROR tests/test_openmp.py::test_Record::test_r_after_5 - FileNotFoundError: ... ERROR tests/test_openmp.py::test_Record::test_r_first_neurons - FileNotFoundE... ERROR tests/test_openmp.py::test_Record::test_r_from_rank - FileNotFoundError... ERROR tests/test_openmp.py::test_Record::test_r_ref - FileNotFoundError: [Err... ERROR tests/test_openmp.py::test_Record::test_r_sim_10 - FileNotFoundError: [... ERROR tests/test_openmp.py::test_Record::test_r_sim_100_p_10 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Record::test_spike - FileNotFoundError: [Err... ERROR tests/test_openmp.py::test_Record::test_spike_ref - FileNotFoundError: ... ERROR tests/test_openmp.py::test_Record::test_startrec - FileNotFoundError: [... ERROR tests/test_openmp.py::test_Report_Rate::test_md_report - ANNarchy.inter... ERROR tests/test_openmp.py::test_Report_Rate::test_tex_report - ANNarchy.inte... ERROR tests/test_openmp.py::test_Report_Spiking::test_md_report - ANNarchy.in... ERROR tests/test_openmp.py::test_Report_Spiking::test_tex_report - ANNarchy.i... ERROR tests/test_openmp.py::test_TimedArray::test_compile - FileNotFoundError... ERROR tests/test_openmp.py::test_TimedArray::test_more_steps - FileNotFoundEr... ERROR tests/test_openmp.py::test_TimedArray::test_run_one_loop - FileNotFound... ERROR tests/test_openmp.py::test_TimedArray::test_run_one_period - FileNotFou... ERROR tests/test_openmp.py::test_TimedArray::test_run_one_period_one_schedule ERROR tests/test_openmp.py::test_TimedArray::test_run_one_schedule - FileNotF... ERROR tests/test_openmp.py::test_TimedArrayUpdate::test_compile - FileNotFoun... ERROR tests/test_openmp.py::test_TimedArrayUpdate::test_run_one_loop - FileNo... ERROR tests/test_openmp.py::test_TimedArrayUpdate::test_run_one_loop_and_period ERROR tests/test_openmp.py::test_Population1D::test_coordinates_from_rank - F... ERROR tests/test_openmp.py::test_Population1D::test_get_neuron_r - FileNotFou... ERROR tests/test_openmp.py::test_Population1D::test_get_neuron_tau - FileNotF... ERROR tests/test_openmp.py::test_Population1D::test_get_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population1D::test_get_r2 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population1D::test_get_r_with_init - FileNot... ERROR tests/test_openmp.py::test_Population1D::test_get_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population1D::test_get_tau2 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Population1D::test_get_tau_population - File... ERROR tests/test_openmp.py::test_Population1D::test_popattributes - FileNotFo... ERROR tests/test_openmp.py::test_Population1D::test_rank_from_coordinates - F... ERROR tests/test_openmp.py::test_Population1D::test_reset - FileNotFoundError... ERROR tests/test_openmp.py::test_Population1D::test_set_neuron_tau - FileNotF... ERROR tests/test_openmp.py::test_Population1D::test_set_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population1D::test_set_r3 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population1D::test_set_r_2 - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population1D::test_set_r_uniform - FileNotFo... ERROR tests/test_openmp.py::test_Population1D::test_set_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population1D::test_set_tau_2 - FileNotFoundE... ERROR tests/test_openmp.py::test_Population1D::test_set_tau_popview - FileNot... ERROR tests/test_openmp.py::test_Population2D::test_coordinates_from_rank - F... ERROR tests/test_openmp.py::test_Population2D::test_get_neuron_r - FileNotFou... ERROR tests/test_openmp.py::test_Population2D::test_get_neuron_tau - FileNotF... ERROR tests/test_openmp.py::test_Population2D::test_get_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population2D::test_get_r2 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population2D::test_get_r_with_init - FileNot... ERROR tests/test_openmp.py::test_Population2D::test_get_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2D::test_get_tau2 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Population2D::test_get_tau_population - File... ERROR tests/test_openmp.py::test_Population2D::test_popattributes - FileNotFo... ERROR tests/test_openmp.py::test_Population2D::test_rank_from_coordinates - F... ERROR tests/test_openmp.py::test_Population2D::test_reset - FileNotFoundError... ERROR tests/test_openmp.py::test_Population2D::test_set_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population2D::test_set_r3 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population2D::test_set_r_2 - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2D::test_set_r_uniform - FileNotFo... ERROR tests/test_openmp.py::test_Population2D::test_set_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2D::test_set_tau_2 - FileNotFoundE... ERROR tests/test_openmp.py::test_Population2D::test_set_tau_popview - FileNot... ERROR tests/test_openmp.py::test_Population3D::test_coordinates_from_rank - F... ERROR tests/test_openmp.py::test_Population3D::test_get_neuron_r - FileNotFou... ERROR tests/test_openmp.py::test_Population3D::test_get_neuron_tau - FileNotF... ERROR tests/test_openmp.py::test_Population3D::test_get_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population3D::test_get_r2 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population3D::test_get_r_with_init - FileNot... ERROR tests/test_openmp.py::test_Population3D::test_get_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population3D::test_get_tau2 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Population3D::test_get_tau_population - File... ERROR tests/test_openmp.py::test_Population3D::test_popattributes - FileNotFo... ERROR tests/test_openmp.py::test_Population3D::test_rank_from_coordinates - F... ERROR tests/test_openmp.py::test_Population3D::test_reset - FileNotFoundError... ERROR tests/test_openmp.py::test_Population3D::test_set_r - FileNotFoundError... ERROR tests/test_openmp.py::test_Population3D::test_set_r3 - FileNotFoundErro... ERROR tests/test_openmp.py::test_Population3D::test_set_r_2 - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population3D::test_set_r_uniform - FileNotFo... ERROR tests/test_openmp.py::test_Population3D::test_set_tau - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population3D::test_set_tau_2 - FileNotFoundE... ERROR tests/test_openmp.py::test_Population3D::test_set_tau_popview - FileNot... ERROR tests/test_openmp.py::test_Population2x3D::test_coordinates_from_rank ERROR tests/test_openmp.py::test_Population2x3D::test_get_neuron_r - FileNotF... ERROR tests/test_openmp.py::test_Population2x3D::test_get_neuron_tau - FileNo... ERROR tests/test_openmp.py::test_Population2x3D::test_get_r - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2x3D::test_get_r2 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Population2x3D::test_get_r_with_init - FileN... ERROR tests/test_openmp.py::test_Population2x3D::test_get_tau - FileNotFoundE... ERROR tests/test_openmp.py::test_Population2x3D::test_get_tau2 - FileNotFound... ERROR tests/test_openmp.py::test_Population2x3D::test_get_tau_population - Fi... ERROR tests/test_openmp.py::test_Population2x3D::test_popattributes - FileNot... ERROR tests/test_openmp.py::test_Population2x3D::test_rank_from_coordinates ERROR tests/test_openmp.py::test_Population2x3D::test_reset - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2x3D::test_set_r - FileNotFoundErr... ERROR tests/test_openmp.py::test_Population2x3D::test_set_r3 - FileNotFoundEr... ERROR tests/test_openmp.py::test_Population2x3D::test_set_r_2 - FileNotFoundE... ERROR tests/test_openmp.py::test_Population2x3D::test_set_r_uniform - FileNot... ERROR tests/test_openmp.py::test_Population2x3D::test_set_tau - FileNotFoundE... ERROR tests/test_openmp.py::test_Population2x3D::test_set_tau_2 - FileNotFoun... ERROR tests/test_openmp.py::test_Population2x3D::test_set_tau_popview - FileN... ERROR tests/test_openmp.py::test_PopulationView::test_get_r - FileNotFoundErr... ERROR tests/test_openmp.py::test_PopulationView::test_index_type - FileNotFou... ERROR tests/test_openmp.py::test_PopulationView::test_rank_assignment_column ERROR tests/test_openmp.py::test_PopulationView::test_rank_assignment_row - F... ERROR tests/test_openmp.py::test_PopulationView::test_set_r - FileNotFoundErr... ERROR tests/test_openmp.py::test_IndividualNeuron::test_get_r - FileNotFoundE... ERROR tests/test_openmp.py::test_IndividualNeuron::test_rank_assignment - Fil... ERROR tests/test_openmp.py::test_IndividualNeuron::test_set_r - FileNotFoundE... ERROR tests/test_openmp.py::test_GlobalOps_1D::test_get_l1_norm - FileNotFoun... ERROR tests/test_openmp.py::test_GlobalOps_1D::test_get_l2_norm - FileNotFoun... ERROR tests/test_openmp.py::test_GlobalOps_1D::test_get_max_r - FileNotFoundE... ERROR tests/test_openmp.py::test_GlobalOps_1D::test_get_mean_r - FileNotFound... ERROR tests/test_openmp.py::test_GlobalOps_1D::test_get_min_r - FileNotFoundE... ERROR tests/test_openmp.py::test_GlobalOps_1D_Large::test_max_r - FileNotFoun... ERROR tests/test_openmp.py::test_GlobalOps_1D_Large::test_mean_r - FileNotFou... ERROR tests/test_openmp.py::test_GlobalOps_1D_Large::test_min_r - FileNotFoun... ERROR tests/test_openmp.py::test_GlobalOps_2D::test_get_l1_norm - FileNotFoun... ERROR tests/test_openmp.py::test_GlobalOps_2D::test_get_max_r - FileNotFoundE... ERROR tests/test_openmp.py::test_GlobalOps_2D::test_get_mean_r - FileNotFound... ERROR tests/test_openmp.py::test_GlobalOps_2D::test_get_min_r - FileNotFoundE... ERROR tests/test_openmp.py::test_NeuronUpdate::test_bound_update - FileNotFou... ERROR tests/test_openmp.py::test_NeuronUpdate::test_single_update_global - Fi... ERROR tests/test_openmp.py::test_NeuronUpdate::test_single_update_local - Fil... ERROR tests/test_openmp.py::test_NeuronUpdate::test_single_update_mixed - Fil... ERROR tests/test_openmp.py::test_SpikingCondition::test_v - FileNotFoundError... ERROR tests/test_openmp.py::test_SpikingCondition::test_v_conditioned - FileN... ERROR tests/test_openmp.py::test_SpikingCondition::test_v_ref - FileNotFoundE... ERROR tests/test_openmp.py::test_CurrentInjection::test_compile - FileNotFoun... ERROR tests/test_openmp.py::test_CurrentInjection::test_run_one_loop - FileNo... ERROR tests/test_openmp.py::test_StructuralPlasticityModel::test_invoke_compile ERROR tests/test_openmp.py::test_StructuralPlasticityModelDelay::test_invoke_compile ERROR tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_create_multiple_synapses ERROR tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_create_single_synapse ERROR tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_complete_dendrite ERROR tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_multiple_synapses ERROR tests/test_openmp.py::test_StructuralPlasticityEnvironment::test_prune_single_synapse ERROR tests/test_openmp.py::test_Convolution::test_bank_of_filters - FileNotF... ERROR tests/test_openmp.py::test_Convolution::test_get_post_ranks - FileNotFo... ERROR tests/test_openmp.py::test_Convolution::test_get_size - FileNotFoundErr... ERROR tests/test_openmp.py::test_Convolution::test_get_weights - FileNotFound... ERROR tests/test_openmp.py::test_Convolution::test_layer_wise_conv - FileNotF... ERROR tests/test_openmp.py::test_Convolution::test_non_linear_conv - FileNotF... ERROR tests/test_openmp.py::test_Convolution::test_post_max_convolution - Fil... ERROR tests/test_openmp.py::test_Convolution::test_post_simple_convolution - ... ERROR tests/test_openmp.py::test_Convolution::test_simple_bank_of_filters - F... ERROR tests/test_openmp.py::test_Pooling::test_get_post_ranks - FileNotFoundE... ERROR tests/test_openmp.py::test_Pooling::test_get_size - FileNotFoundError: ... ERROR tests/test_openmp.py::test_Pooling::test_pool - FileNotFoundError: [Err... ERROR tests/test_openmp.py::test_Pooling::test_pool2 - FileNotFoundError: [Er... ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_csr_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_csr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_ellr_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_ellr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_sell_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_sell_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_dense_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionAllToAll_dense_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_csr_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_csr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_ellr_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_ellr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_sell_post_to_pre::test_ranks ERROR tests/test_openmp.py::test_RateTransmissionOneToOne_sell_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionFixedNumberPre_csr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionFixedNumberPre_ellr_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionFixedNumberPre_sell_post_to_pre::test_weights ERROR tests/test_openmp.py::test_RateTransmissionFixedNumberPre_dense_post_to_pre::test_weights ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_lil_post_to_pre::test_no_delay ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_csr_post_to_pre::test_no_delay ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_ell_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNoDelay_ell_post_to_pre::test_no_delay ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_lil_post_to_pre::test_uniform_delay ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_csr_post_to_pre::test_uniform_delay ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_ell_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityUniformDelay_ell_post_to_pre::test_uniform_delay ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_lil_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_csr_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_ell_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteDefaultSynapse_dense_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_by_name ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_alpha ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_tau ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_alpha ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_alpha_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_tau ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_tau_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_lil_post_to_pre::test_set_with_dict ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_dendrite_size ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_by_name ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_alpha ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_tau ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_get_dendrite_weights ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_none ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_pre_ranks ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_alpha ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_alpha_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_tau ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_tau_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_weights ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_weights_2 ERROR tests/test_openmp.py::test_DendriteModifiedSynapse_csr_post_to_pre::test_set_with_dict ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_alpha ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_alpha_2 ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_dendrite_w ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_post_ranks ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_size - ... ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_tau - F... ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_tau_2 ERROR tests/test_openmp.py::test_Projection_lil_post_to_pre::test_get_w - Fil... ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_alpha ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_alpha_2 ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_dendrite_w ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_post_ranks ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_size - ... ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_tau - A... ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_tau_2 ERROR tests/test_openmp.py::test_Projection_csr_post_to_pre::test_get_w - Att... ERROR tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_all_to_all - F... ERROR tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_fixed_number_pre ERROR tests/test_openmp.py::test_NoDelay_lil_post_to_pre::test_one_to_one - F... ERROR tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_all_to_all - A... ERROR tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_fixed_number_pre ERROR tests/test_openmp.py::test_NoDelay_csr_post_to_pre::test_one_to_one - A... ERROR tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_all_to_all - A... ERROR tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_fixed_number_pre ERROR tests/test_openmp.py::test_NoDelay_ell_post_to_pre::test_one_to_one - A... ERROR tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_max ERROR tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_mean ERROR tests/test_openmp.py::test_SynapseOperations_lil_post_to_pre::test_min ERROR tests/test_openmp.py::test_SynapticAccess_lil_post_to_pre::test_compile ERROR tests/test_openmp.py::test_SynapticAccess_csr_post_to_pre::test_compile ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_configured_delay_global ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_configured_delay_local ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_get_delay ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_modified_delay_global ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_modified_delay_local ERROR tests/test_openmp.py::test_UniformDelay_lil_post_to_pre::test_set_delay ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_configured_delay_global ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_configured_delay_local ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_get_delay ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_modified_delay_global ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_modified_delay_local ERROR tests/test_openmp.py::test_UniformDelay_csr_post_to_pre::test_set_delay ERROR tests/test_openmp.py::test_PreSpike_lil_post_to_pre::test_w - FileNotFo... ERROR tests/test_openmp.py::test_PreSpike_csr_post_to_pre::test_w - Attribute... ERROR tests/test_openmp.py::test_PostSpike_lil_post_to_pre::test_w - FileNotF... ERROR tests/test_openmp.py::test_PostSpike_csr_post_to_pre::test_w - Attribut... ERROR tests/test_openmp.py::test_TimeDependentUpdate_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_TimeDependentUpdate_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_SpikeTransmissionNoDelay_lil_post_to_pre::test_non_delay ERROR tests/test_openmp.py::test_SpikeTransmissionNoDelay_csr_post_to_pre::test_non_delay ERROR tests/test_openmp.py::test_SpikeTransmissionUniformDelay_lil_post_to_pre::test_uniform_delay ERROR tests/test_openmp.py::test_SpikeTransmissionUniformDelay_csr_post_to_pre::test_uniform_delay ERROR tests/test_openmp.py::test_RateCodedContinuousUpdate_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_RateCodedContinuousUpdate_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_RateCodedContinuousUpdate_dense_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_SpikingContinuousUpdate_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_SpikingContinuousUpdate_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_lil_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_csr_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_CustomConnectivityNonUniformDelay_ell_post_to_pre::test_invoke_compile ERROR tests/test_openmp.py::test_SpikeTransmissionNonUniformDelay_lil_post_to_pre::test_nonuniform_delay ============ 10 failed, 1 warning, 308 errors in 637.49s (0:10:37) ============= Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network Remove network error: Bad exit status from /var/tmp/rpm-tmp.8nchu0 (%check) Bad exit status from /var/tmp/rpm-tmp.8nchu0 (%check) RPM build errors: Child return code was: 1 EXCEPTION: [Error('Command failed: \n # /usr/bin/systemd-nspawn -q -M a8b83dff6af443678f4450b833a67b7c -D /var/lib/mock/f41-build-848087-164378/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin \'--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"\' \'--setenv=PS1= \\s-\\v\\$ \' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c \'/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec\'\n', 1)] Traceback (most recent call last): File "/usr/lib/python3.12/site-packages/mockbuild/trace_decorator.py", line 93, in trace result = func(*args, **kw) ^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.12/site-packages/mockbuild/util.py", line 612, in do_with_status raise exception.Error("Command failed: \n # %s\n%s" % (cmd_pretty(command, env), output), child.returncode) mockbuild.exception.Error: Command failed: # /usr/bin/systemd-nspawn -q -M a8b83dff6af443678f4450b833a67b7c -D /var/lib/mock/f41-build-848087-164378/root -a -u mockbuild --capability=cap_ipc_lock --bind=/tmp/mock-resolv.zyv3yczd:/etc/resolv.conf --bind=/dev/btrfs-control --bind=/dev/mapper/control --bind=/dev/fuse --bind=/dev/loop-control --bind=/dev/loop0 --bind=/dev/loop1 --bind=/dev/loop2 --bind=/dev/loop3 --bind=/dev/loop4 --bind=/dev/loop5 --bind=/dev/loop6 --bind=/dev/loop7 --bind=/dev/loop8 --bind=/dev/loop9 --bind=/dev/loop10 --bind=/dev/loop11 --console=pipe --setenv=TERM=vt100 --setenv=SHELL=/bin/bash --setenv=HOME=/builddir --setenv=HOSTNAME=mock --setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin '--setenv=PROMPT_COMMAND=printf "\033]0;\007"' '--setenv=PS1= \s-\v\$ ' --setenv=LANG=C.UTF-8 --resolv-conf=off bash --login -c '/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-annarchy.spec'