Mock Version: 1.4.9 Mock Version: 1.4.9 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/dssp.spec'], chrootPath='/var/lib/mock/f29-build-19912-10527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --target riscv64 --nodeps /builddir/build/SPECS/dssp.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Wrote: /builddir/build/SRPMS/dssp-3.0.0-3.fc29.src.rpm Child return code was: 0 ENTER ['do'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/dssp.spec'], chrootPath='/var/lib/mock/f29-build-19912-10527/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'}shell=Falselogger=timeout=345600uid=998gid=135user='mockbuild'nspawn_args=[]unshare_net=FalseprintOutput=False) Executing command: ['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --target riscv64 --nodeps /builddir/build/SPECS/dssp.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'en_US.UTF-8'} and shell False Building target platforms: riscv64 Building for target riscv64 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.NyFZ8e + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf dssp-3.0.0 + /usr/bin/gzip -dc /builddir/build/SOURCES/dssp-3.0.0.tgz + /usr/bin/tar -xof - + STATUS=0 + '[' 0 -ne 0 ']' + cd dssp-3.0.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . + echo 'Patch #1 (dssp-make.patch):' Patch #1 (dssp-make.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .make --fuzz=0 patching file makefile + echo 'Patch #2 (dssp-tuple.patch):' Patch #2 (dssp-tuple.patch): + /usr/bin/patch --no-backup-if-mismatch -p1 -b --suffix .tuple --fuzz=0 patching file src/primitives-3d.h patching file src/structure.h patching file src/primitives-3d.cpp patching file src/dssp.cpp patching file src/structure.cpp + chmod -x src/buffer.h + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.OVD37o + umask 022 + cd /builddir/build/BUILD + cd dssp-3.0.0 + '[' -f /usr/lib64/libboost_thread-mt.so ']' + echo 'BOOST_LIB_SUFFIX = ' + echo 'CFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include BUILDSTDERR: LDOPTS=-Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -L/usr/lib64' + make -j4 mkdir -p obj g++ -MD -c -o obj/mkdssp.o src/mkdssp.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/dssp.o src/dssp.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/primitives-3d.o src/primitives-3d.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/structure.o src/structure.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/utils.o src/utils.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG BUILDSTDERR: In file included from src/structure.cpp:9: BUILDSTDERR: src/structure.h: In constructor 'MResidue::MResidue(int32, char, MResidue*)': BUILDSTDERR: src/structure.h:283:17: warning: 'MResidue::mRadius' will be initialized after [-Wreorder] BUILDSTDERR: double mRadius; BUILDSTDERR: ^~~~~~~ BUILDSTDERR: src/structure.h:274:33: warning: 'MAtom MResidue::mH' [-Wreorder] BUILDSTDERR: MAtom mC, mN, mCA, mO, mH; BUILDSTDERR: ^~ BUILDSTDERR: src/structure.cpp:440:1: warning: when initialized here [-Wreorder] BUILDSTDERR: MResidue::MResidue(int32 inNumber, char inTypeCode, MResidue* inPrevious) BUILDSTDERR: ^~~~~~~~ BUILDSTDERR: In file included from src/structure.cpp:9: BUILDSTDERR: src/structure.h: In constructor 'MProtein::MProtein(const string&, MChain*)': BUILDSTDERR: src/structure.h:430:40: warning: 'MProtein::mNrOfHBondsInAntiparallelBridges' will be initialized after [-Wreorder] BUILDSTDERR: uint32 mNrOfHBondsInParallelBridges, mNrOfHBondsInAntiparallelBridges; BUILDSTDERR: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BUILDSTDERR: src/structure.h:424:17: warning: 'uint32 MProtein::mResidueCount' [-Wreorder] BUILDSTDERR: uint32 mResidueCount, mChainBreaks; BUILDSTDERR: ^~~~~~~~~~~~~ BUILDSTDERR: src/structure.cpp:1031:1: warning: when initialized here [-Wreorder] BUILDSTDERR: MProtein::MProtein(const std::string& inID, MChain* inChain) BUILDSTDERR: ^~~~~~~~ g++ -MD -c -o obj/mas.o src/mas.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -MD -c -o obj/iocif.o src/iocif.cpp -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION='"2.2.1"' -DNDEBUG g++ -o mkdssp obj/mkdssp.o obj/dssp.o obj/primitives-3d.o obj/structure.o obj/utils.o obj/mas.o obj/iocif.o -Wl,-z,relro -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -L/usr/lib64 -lboost_thread -lboost_filesystem -lboost_program_options -lboost_iostreams -lboost_system -lz -lbz2 -g -pthread + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.aUrrXt + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 '!=' / ']' + rm -rf /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 BUILDSTDERR: ++ dirname /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 + cd dssp-3.0.0 + make install DEST_DIR=/usr DESTDIR=/builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 install -d /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/bin /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/man/man1 install -m 755 mkdssp /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/bin/mkdssp install doc/mkdssp.1 /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/man/man1/mkdssp.1 + chmod -x /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/man/man1/mkdssp.1 + /usr/lib/rpm/find-debuginfo.sh -j4 --strict-build-id -m -i --build-id-seed 3.0.0-3.fc29 --unique-debug-suffix -3.0.0-3.fc29.riscv64 --unique-debug-src-base dssp-3.0.0-3.fc29.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/dssp-3.0.0 extracting debug info from /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/bin/mkdssp /usr/lib/rpm/sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match. BUILDSTDERR: 356 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig BUILDSTDERR: /sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory + /usr/lib/rpm/brp-compress + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1 1 + /usr/lib/rpm/brp-python-hardlink + /usr/lib/rpm/redhat/brp-mangle-shebangs BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/utils.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/structure.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/align-2d.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/mas.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/structure.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/primitives-3d.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/mkdssp.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/iocif.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/matrix.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/primitives-3d.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/iocif.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/utils.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/dssp.h is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/mas.cpp is executable but has empty or no shebang, removing executable bit BUILDSTDERR: *** WARNING: ./usr/src/debug/dssp-3.0.0-3.fc29.riscv64/src/dssp.cpp is executable but has empty or no shebang, removing executable bit Processing files: dssp-3.0.0-3.fc29.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.GnbCdv + umask 022 + cd /builddir/build/BUILD + cd dssp-3.0.0 + DOCDIR=/builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/doc/dssp + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/doc/dssp + cp -pr changelog /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/doc/dssp + cp -pr README.txt /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/doc/dssp Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.YDzrNz + exit 0 + umask 022 + cd /builddir/build/BUILD + cd dssp-3.0.0 + LICENSEDIR=/builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/licenses/dssp + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/licenses/dssp + cp -pr LICENSE_1_0.txt /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64/usr/share/licenses/dssp + exit 0 Provides: dssp = 3.0.0-3.fc29 dssp(riscv-64) = 3.0.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libboost_filesystem.so.1.66.0()(64bit) libboost_iostreams.so.1.66.0()(64bit) libboost_program_options.so.1.66.0()(64bit) libboost_system.so.1.66.0()(64bit) libboost_thread.so.1.66.0()(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libgcc_s.so.1(GCC_4.0.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libpthread.so.0()(64bit) libpthread.so.0(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.15)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) rtld(GNU_HASH) Processing files: dssp-debugsource-3.0.0-3.fc29.riscv64 Provides: dssp-debugsource = 3.0.0-3.fc29 dssp-debugsource(riscv-64) = 3.0.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: dssp-debuginfo-3.0.0-3.fc29.riscv64 Provides: debuginfo(build-id) = 7fd18cccf3cbed757282c0c9a07f8f5b5d6545ea dssp-debuginfo = 3.0.0-3.fc29 dssp-debuginfo(riscv-64) = 3.0.0-3.fc29 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: dssp-debugsource(riscv-64) = 3.0.0-3.fc29 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 Wrote: /builddir/build/RPMS/dssp-3.0.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/dssp-debugsource-3.0.0-3.fc29.riscv64.rpm Wrote: /builddir/build/RPMS/dssp-debuginfo-3.0.0-3.fc29.riscv64.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.ogBlaU + umask 022 + cd /builddir/build/BUILD + cd dssp-3.0.0 + /usr/bin/rm -rf /builddir/build/BUILDROOT/dssp-3.0.0-3.fc29.riscv64 + exit 0 Child return code was: 0